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Zinc in PDB 6sar: E Coli Bepa/Yfgc

Protein crystallography data

The structure of E Coli Bepa/Yfgc, PDB code: 6sar was solved by A.L.Lovering, I.T.Cadby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.02 / 2.18
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.120, 77.020, 124.600, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.1

Zinc Binding Sites:

The binding sites of Zinc atom in the E Coli Bepa/Yfgc (pdb code 6sar). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the E Coli Bepa/Yfgc, PDB code: 6sar:

Zinc binding site 1 out of 1 in 6sar

Go back to Zinc Binding Sites List in 6sar
Zinc binding site 1 out of 1 in the E Coli Bepa/Yfgc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of E Coli Bepa/Yfgc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:37.5
occ:1.00
ND1 A:HIS246 2.0 44.0 1.0
NE2 A:HIS140 2.1 35.6 1.0
NE2 A:HIS136 2.2 33.3 1.0
OE2 A:GLU201 2.3 43.8 1.0
OE1 A:GLU201 2.4 40.6 1.0
CD A:GLU201 2.7 40.7 1.0
CE1 A:HIS246 2.8 41.0 1.0
CG A:HIS246 3.1 38.4 1.0
CE1 A:HIS140 3.1 36.6 1.0
CD2 A:HIS140 3.1 34.5 1.0
CD2 A:HIS136 3.1 30.5 1.0
CE1 A:HIS136 3.1 33.9 1.0
CB A:HIS246 3.5 35.3 1.0
NE2 A:HIS246 4.0 38.4 1.0
CD2 A:HIS246 4.1 35.7 1.0
CD2 A:PHE196 4.1 57.7 1.0
ND1 A:HIS140 4.2 38.3 1.0
CG A:GLU201 4.2 41.2 1.0
ND1 A:HIS136 4.2 33.3 1.0
CG A:HIS136 4.2 29.8 1.0
CG A:HIS140 4.2 34.7 1.0
CA A:HIS246 4.3 36.4 1.0
CE2 A:PHE196 4.5 56.2 1.0
CG A:PHE196 4.6 60.8 1.0
OE2 A:GLU137 4.7 47.7 1.0
CA A:GLU201 4.7 39.5 1.0
CB A:ALA204 4.8 38.1 1.0
CB A:GLU201 4.9 40.2 1.0
CB A:PHE196 4.9 61.9 1.0
NH2 A:ARG252 5.0 39.0 1.0
O A:HOH684 5.0 55.1 1.0

Reference:

J.A.Bryant, A.L.Lovering, I.T.Cadby. Structure Function Analysis of the Escherichia Coli Beta Barrel Assembly Enhancing Protease Bepa Suggests A Role For A Self Inhibitory State To Be Published.
Page generated: Tue Oct 29 07:05:24 2024

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