Zinc in PDB 6s8b: Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1

The structure of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 also contains other interesting chemical elements:

Manganese

(Mn)

3 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 (pdb code 6s8b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1, PDB code: 6s8b:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn1101 b:30.0 occ:1.00 SG K:CYS515 2.3 57.3 1.0 SG K:CYS464 2.3 51.2 1.0 CB K:CYS464 2.3 51.2 1.0 CB K:CYS512 3.1 53.9 1.0 SG K:CYS512 3.1 53.9 1.0 N K:CYS512 3.1 53.9 1.0 CB K:CYS515 3.2 57.3 1.0 N K:CYS467 3.5 60.5 1.0 SG K:CYS467 3.7 60.5 1.0 CA K:CYS512 3.7 53.9 1.0 CA K:CYS464 3.8 51.2 1.0 CB K:CYS467 3.9 60.5 1.0 CB K:SER466 4.0 57.0 1.0 N K:SER466 4.1 57.0 1.0 C K:LEU511 4.1 55.4 1.0 C K:CYS464 4.2 51.2 1.0 C K:SER466 4.2 57.0 1.0 CA K:SER466 4.3 57.0 1.0 CA K:LEU511 4.3 55.4 1.0 CA K:CYS467 4.3 60.5 1.0 O K:ARG510 4.4 58.3 1.0 CA K:CYS515 4.4 57.3 1.0 O K:CYS464 4.5 51.2 1.0 N K:CYS515 4.6 57.3 1.0 N K:CYS464 4.7 51.2 1.0 OG K:SER466 4.7 57.0 1.0 N K:THR465 4.7 55.5 1.0 C K:CYS512 4.7 53.9 1.0 O K:CYS512 4.9 53.9 1.0

N.Sofos, M.Feng, S.Stella, T.Pape, A.Fuglsang, J.Lin, Q.Huang, Y.Li, Q.She, G.Montoya. Structures of the Cmr-Beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B Crispr-Cas. Mol.Cell V. 79 741 2020.
ISSN: ISSN 1097-2765
PubMed: 32730741
DOI: 10.1016/J.MOLCEL.2020.07.008