Zinc in PDB 6rps: X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment

Enzymatic activity of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment

All present enzymatic activity of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment:
4.2.1.1;

Protein crystallography data

The structure of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment, PDB code: 6rps was solved by V.Alterio, D.Esposito, G.De Simone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.65 / 2.79
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 77.335, 222.165, 266.988, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 23.1

Other elements in 6rps:

The structure of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment also contains other interesting chemical elements:

Cadmium (Cd) 4 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment (pdb code 6rps). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment, PDB code: 6rps:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6rps

Go back to Zinc Binding Sites List in 6rps
Zinc binding site 1 out of 2 in the X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:17.5
occ:1.00
O A:HOH404 2.0 15.3 1.0
NE2 A:HIS94 2.0 23.0 1.0
ND1 A:HIS119 2.0 22.4 1.0
NE2 A:HIS96 2.0 21.8 1.0
OXT A:ACT302 2.1 22.1 1.0
CE1 A:HIS119 2.9 24.6 1.0
C A:ACT302 2.9 24.5 1.0
CD2 A:HIS94 3.0 26.4 1.0
CE1 A:HIS94 3.0 25.2 1.0
CE1 A:HIS96 3.0 22.3 1.0
O A:ACT302 3.0 25.7 1.0
CD2 A:HIS96 3.1 23.4 1.0
CG A:HIS119 3.2 23.0 1.0
OG1 A:THR199 3.5 23.4 1.0
CB A:HIS119 3.6 22.8 1.0
OE1 A:GLU106 3.8 25.1 1.0
NE2 A:HIS119 4.1 24.4 1.0
ND1 A:HIS94 4.1 25.7 1.0
CG A:HIS94 4.2 24.6 1.0
ND1 A:HIS96 4.2 21.5 1.0
CG A:HIS96 4.2 22.1 1.0
CD2 A:HIS119 4.2 23.6 1.0
CH3 A:ACT302 4.3 25.2 1.0
CD A:GLU106 4.8 22.9 1.0
CB A:THR199 4.9 23.5 1.0

Zinc binding site 2 out of 2 in 6rps

Go back to Zinc Binding Sites List in 6rps
Zinc binding site 2 out of 2 in the X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Crystal Structure of Carbonic Anhydrase XII Complexed with A Theranostic Monoclonal Antibody Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:15.0
occ:1.00
O B:HOH401 2.0 12.9 1.0
NE2 B:HIS94 2.0 17.4 1.0
ND1 B:HIS119 2.0 17.6 1.0
NE2 B:HIS96 2.1 17.0 1.0
OXT B:ACT302 2.1 21.5 1.0
CE1 B:HIS119 2.9 17.6 1.0
C B:ACT302 3.0 26.3 1.0
CE1 B:HIS94 3.0 17.4 1.0
CD2 B:HIS94 3.0 19.2 1.0
CE1 B:HIS96 3.0 17.3 1.0
CD2 B:HIS96 3.1 17.6 1.0
CG B:HIS119 3.1 18.1 1.0
O B:ACT302 3.2 28.2 1.0
OG1 B:THR199 3.6 22.2 1.0
CB B:HIS119 3.6 18.2 1.0
OE1 B:GLU106 3.9 20.5 1.0
NE2 B:HIS119 4.1 16.9 1.0
ND1 B:HIS94 4.1 18.1 1.0
CG B:HIS94 4.2 18.8 1.0
ND1 B:HIS96 4.2 18.0 1.0
CD2 B:HIS119 4.2 17.7 1.0
CG B:HIS96 4.3 18.7 1.0
CH3 B:ACT302 4.3 27.6 1.0
CD B:GLU106 4.8 21.9 1.0
CB B:THR199 4.9 22.6 1.0
CH2 B:TRP209 5.0 19.4 1.0

Reference:

V.Alterio, M.Kellner, D.Esposito, F.Liesche-Starnecker, S.Bua, C.T.Supuran, S.M.Monti, R.Zeidler, G.De Simone. Biochemical and Structural Insights Into Carbonic Anhydrase XII/FAB6A10 Complex. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31682835
DOI: 10.1016/J.JMB.2019.10.022
Page generated: Wed Dec 16 12:41:18 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy