Atomistry » Zinc » PDB 6rg4-6rpc » 6ro4
Atomistry »
  Zinc »
    PDB 6rg4-6rpc »
      6ro4 »

Zinc in PDB 6ro4: Structure of the Core Tfiih-Xpa-Dna Complex

Enzymatic activity of Structure of the Core Tfiih-Xpa-Dna Complex

All present enzymatic activity of Structure of the Core Tfiih-Xpa-Dna Complex:
3.6.4.12;

Other elements in 6ro4:

The structure of Structure of the Core Tfiih-Xpa-Dna Complex also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Core Tfiih-Xpa-Dna Complex (pdb code 6ro4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Structure of the Core Tfiih-Xpa-Dna Complex, PDB code: 6ro4:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 1 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn401

b:0.2
occ:1.00
 SG E:CYS268 2.2 68.3 1.0
SG E:CYS282 2.2 96.2 1.0
SG E:CYS285 2.3 0.3 1.0
SG E:CYS271 2.3 80.2 1.0
CB E:CYS271 2.7 80.2 1.0
N E:CYS271 3.2 80.2 1.0
CB E:CYS268 3.3 68.3 1.0
CA E:CYS271 3.5 80.2 1.0
CG1 E:VAL270 3.5 79.1 1.0
OG1 E:THR284 3.6 94.2 1.0
CB E:CYS282 3.9 96.2 1.0
CB E:CYS285 3.9 0.3 1.0
N E:CYS285 4.0 0.3 1.0
C E:CYS271 4.2 80.2 1.0
C E:VAL270 4.3 79.1 1.0
N E:LEU272 4.4 66.1 1.0
CA E:CYS285 4.4 0.3 1.0
N E:VAL270 4.5 79.1 1.0
CB E:VAL270 4.7 79.1 1.0
CA E:CYS268 4.7 68.3 1.0
CA E:VAL270 4.7 79.1 1.0
C E:CYS285 4.8 0.3 1.0
CB E:THR284 4.8 94.2 1.0
CA E:CYS282 5.0 96.2 1.0
C E:THR284 5.0 94.2 1.0

Zinc binding site 2 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 2 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn402

b:0.7
occ:1.00
 SG E:CYS255 2.2 92.6 1.0
SG E:CYS257 2.2 0.5 1.0
ND1 E:HIS258 2.3 0.3 1.0
SG E:CYS276 2.4 95.6 1.0
CG E:HIS258 3.1 0.3 1.0
N E:HIS258 3.2 0.3 1.0
CB E:HIS258 3.2 0.3 1.0
CE1 E:HIS258 3.3 0.3 1.0
CB E:CYS255 3.5 92.6 1.0
CB E:CYS276 3.6 95.6 1.0
CB E:CYS257 3.8 0.5 1.0
CA E:HIS258 3.8 0.3 1.0
N E:CYS257 3.9 0.5 1.0
C E:CYS257 4.0 0.5 1.0
N E:CYS276 4.1 95.6 1.0
CA E:CYS257 4.1 0.5 1.0
CD2 E:HIS258 4.3 0.3 1.0
NE2 E:HIS258 4.4 0.3 1.0
CA E:CYS276 4.5 95.6 1.0
N E:PHE256 4.7 87.8 1.0
CA E:CYS255 4.8 92.6 1.0
C E:CYS255 4.9 92.6 1.0

Zinc binding site 3 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 3 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:0.9
occ:1.00
 SG D:CYS294 2.2 0.8 1.0
SG D:CYS308 2.3 1.0 1.0
SG D:CYS291 2.3 0.7 1.0
SG D:CYS305 2.4 0.5 1.0
CB D:CYS305 3.0 0.5 1.0
CB D:CYS291 3.4 0.7 1.0
CB D:CYS308 3.5 1.0 1.0
CB D:CYS294 3.7 0.8 1.0
N D:CYS308 3.9 1.0 1.0
N D:CYS294 3.9 0.8 1.0
CA D:CYS308 4.2 1.0 1.0
CA D:CYS294 4.4 0.8 1.0
CA D:CYS305 4.4 0.5 1.0
CB D:GLN293 4.5 0.9 1.0
CB D:LEU310 4.5 98.7 1.0
C D:CYS308 4.6 1.0 1.0
O D:CYS305 4.7 0.5 1.0
N D:LEU310 4.7 98.7 1.0
C D:CYS305 4.7 0.5 1.0
CA D:CYS291 4.8 0.7 1.0
C D:GLN293 4.8 0.9 1.0
N D:GLY309 4.8 0.1 1.0
C D:ILE307 4.9 0.6 1.0
CB D:ILE307 5.0 0.6 1.0

Zinc binding site 4 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 4 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn402

b:0.7
occ:1.00
 SG D:CYS345 2.3 86.4 1.0
SG D:CYS368 2.3 96.6 1.0
SG D:CYS348 2.4 85.4 1.0
SG D:CYS371 2.4 95.3 1.0
CB D:CYS345 3.0 86.4 1.0
CB D:CYS371 3.3 95.3 1.0
CB D:CYS368 3.4 96.6 1.0
N D:CYS368 3.5 96.6 1.0
CB D:CYS348 3.7 85.4 1.0
N D:CYS348 3.7 85.4 1.0
CA D:CYS368 4.0 96.6 1.0
CA D:CYS348 4.3 85.4 1.0
C D:PHE367 4.3 87.6 1.0
CA D:CYS345 4.4 86.4 1.0
CA D:PHE367 4.5 87.6 1.0
CA D:CYS371 4.6 95.3 1.0
N D:GLY347 4.6 82.4 1.0
N D:CYS371 4.7 95.3 1.0
C D:GLY347 4.7 82.4 1.0
CA D:GLY347 4.8 82.4 1.0
N D:GLN349 4.8 79.2 1.0
C D:CYS368 4.9 96.6 1.0
C D:CYS348 4.9 85.4 1.0
CB D:PHE367 5.0 87.6 1.0

Zinc binding site 5 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 5 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn403

b:0.2
occ:1.00
 SG D:CYS385 2.3 95.0 1.0
SG D:CYS360 2.3 0.8 1.0
SG D:CYS382 2.3 92.1 1.0
SG D:CYS363 2.4 0.4 1.0
CB D:CYS382 3.2 92.1 1.0
CB D:CYS363 3.5 0.4 1.0
CB D:CYS360 3.5 0.8 1.0
N D:CYS363 3.7 0.4 1.0
CB D:CYS385 3.8 95.0 1.0
N D:CYS385 3.9 95.0 1.0
CB D:VAL362 4.1 0.4 1.0
CA D:CYS363 4.2 0.4 1.0
CA D:CYS385 4.3 95.0 1.0
C D:GLY384 4.6 90.2 1.0
CG2 D:VAL362 4.6 0.4 1.0
CA D:CYS382 4.6 92.1 1.0
C D:VAL362 4.6 0.4 1.0
CA D:VAL362 4.7 0.4 1.0
CA D:GLY384 4.8 90.2 1.0
N D:VAL362 4.8 0.4 1.0
CE1 D:PHE331 4.8 0.8 1.0
N D:GLY384 4.8 90.2 1.0
CA D:CYS360 4.8 0.8 1.0
C D:CYS382 5.0 92.1 1.0

Zinc binding site 6 out of 6 in 6ro4

Go back to Zinc Binding Sites List in 6ro4
Zinc binding site 6 out of 6 in the Structure of the Core Tfiih-Xpa-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the Core Tfiih-Xpa-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn301

b:0.7
occ:1.00
 SG G:CYS105 2.5 0.0 1.0
SG G:CYS108 2.5 0.3 1.0
SG G:CYS129 2.5 0.3 1.0
SG G:CYS126 2.5 0.4 1.0
CB G:CYS126 3.3 0.4 1.0
N G:CYS108 3.3 0.3 1.0
CB G:CYS108 3.4 0.3 1.0
N G:CYS126 3.5 0.4 1.0
OG1 G:THR125 3.7 0.6 1.0
CB G:CYS105 3.7 0.0 1.0
CA G:CYS126 3.9 0.4 1.0
CA G:CYS108 3.9 0.3 1.0
CB G:GLU107 4.0 0.1 1.0
C G:GLU107 4.2 0.1 1.0
CB G:CYS129 4.3 0.3 1.0
O G:CYS126 4.3 0.4 1.0
C G:CYS126 4.4 0.4 1.0
CA G:GLU107 4.5 0.1 1.0
N G:CYS129 4.5 0.3 1.0
N G:GLU107 4.6 0.1 1.0
C G:THR125 4.6 0.6 1.0
CA G:THR125 4.8 0.6 1.0
CB G:THR125 4.9 0.6 1.0
C G:CYS108 4.9 0.3 1.0
CA G:CYS129 5.0 0.3 1.0

Reference:

G.Kokic, A.Chernev, D.Tegunov, C.Dienemann, H.Urlaub, P.Cramer. Structural Basis of Tfiih Activation For Nucleotide Excision Repair. Nat Commun V. 10 2885 2019.
ISSN: ESSN 2041-1723
PubMed: 31253769
DOI: 10.1038/S41467-019-10745-5
Page generated: Tue Oct 29 06:39:58 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy