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Zinc in PDB 6r46: Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution

Enzymatic activity of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution

All present enzymatic activity of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution:
1.3.1.33;

Protein crystallography data

The structure of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution, PDB code: 6r46 was solved by A.Zhou, L.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.00 / 2.50
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 134.950, 134.950, 104.750, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 24.9

Other elements in 6r46:

The structure of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution (pdb code 6r46). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution, PDB code: 6r46:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 1 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:47.2
occ:0.50
 ND1 A:HIS58 1.9 52.2 1.0
CG A:HIS58 2.7 53.6 1.0
CL A:CL409 2.8 0.0 0.5
CB A:HIS58 2.9 53.3 1.0
CE1 A:HIS58 3.0 52.5 1.0
CL A:CL408 3.7 75.0 1.0
CD2 A:HIS58 3.8 52.9 1.0
NE2 A:HIS58 3.9 51.6 1.0
CA A:HIS58 4.4 54.4 1.0
CD1 A:LEU37 4.7 69.4 1.0
C A:HIS58 4.9 54.2 1.0
O A:HIS58 5.0 55.9 1.0

Zinc binding site 2 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 2 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:0.7
occ:1.00
 ND1 A:HIS113 2.9 43.3 1.0
ND2 A:ASN197 3.3 50.1 1.0
OG1 A:THR200 3.5 47.0 1.0
O A:HIS113 3.6 43.1 1.0
CB A:THR200 3.7 47.5 1.0
CE1 A:HIS113 3.7 45.3 1.0
CG2 A:THR200 3.7 44.8 1.0
CA A:ASN197 3.9 50.4 1.0
CA A:HIS113 3.9 42.0 1.0
CG A:HIS113 4.0 45.4 1.0
O A:CYS196 4.1 48.9 1.0
CB A:HIS116 4.2 45.8 1.0
C A:HIS113 4.2 42.7 1.0
N A:PHE117 4.2 46.8 1.0
O A:ASN112 4.3 42.6 1.0
CG A:ASN197 4.3 54.9 1.0
N A:ASN197 4.4 47.5 1.0
CB A:HIS113 4.4 43.1 1.0
C A:CYS196 4.5 47.8 1.0
CB A:ASN197 4.5 53.2 1.0
CA A:PHE117 4.7 50.2 1.0
CD1 A:ILE120 4.7 54.8 1.0
C A:HIS116 4.7 46.6 1.0
CB A:PHE117 4.7 51.2 1.0
O A:ASN197 4.8 53.0 1.0
C A:ASN197 4.9 53.0 1.0
NE2 A:HIS113 4.9 46.7 1.0
N A:HIS113 5.0 41.7 1.0

Zinc binding site 3 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 3 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:80.8
occ:1.00
 NE2 A:HIS209 2.2 79.2 1.0
CL A:CL407 3.0 0.8 0.5
CD2 A:HIS209 3.1 76.7 1.0
CE1 A:HIS209 3.3 74.6 1.0
CG A:HIS209 4.3 76.4 1.0
ND1 A:HIS209 4.3 74.4 1.0
NE2 A:GLN273 4.4 83.2 1.0
CB A:SER274 4.9 68.7 1.0

Zinc binding site 4 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 4 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:1.0
occ:1.00
 OE1 A:GLU210 3.3 74.0 1.0
CD A:GLU210 4.5 79.3 1.0
CL A:CL407 4.8 0.8 0.5

Zinc binding site 5 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 5 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn406

b:83.9
occ:0.50
 OE1 A:GLU302 3.4 56.0 1.0
CD A:GLU302 3.6 58.7 1.0
NH1 A:ARG306 3.6 76.8 1.0
OE2 A:GLU302 3.7 57.0 1.0
CD A:ARG206 4.1 69.1 1.0
CG A:GLU302 4.5 59.7 1.0
CG A:ARG206 4.7 67.3 1.0
CZ A:ARG306 4.9 75.4 1.0

Reference:

A.Zhou, L.Feng. A Nadph Binding Protein To Be Published.
Page generated: Tue Oct 29 05:57:20 2024

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