Zinc in PDB 6qul: Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid

The structure of Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid also contains other interesting chemical elements:

Fluorine	(F)	2 atoms
Magnesium	(Mg)	382 atoms

The binding sites of Zinc atom in the Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid (pdb code 6qul). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid, PDB code: 6qul:

Zinc binding site 1 out of 1 in the Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Bacterial 50S Ribosomal Subunit in Complex with the Novel Quinoxolidinone Antibiotic Cadazolid within 5.0Å range: probe atom residue distance (Å) B Occ f:Zn101 b:52.0 occ:1.00 ND1 f:HIS33 2.3 16.6 1.0 SG f:CYS27 2.3 16.9 1.0 SG f:CYS14 2.3 18.2 1.0 SG f:CYS11 2.3 21.4 1.0 CB f:CYS27 3.1 16.9 1.0 CG f:HIS33 3.2 16.6 1.0 CE1 f:HIS33 3.3 16.6 1.0 CB f:CYS11 3.3 21.4 1.0 CB f:HIS33 3.4 16.6 1.0 N f:CYS14 3.8 18.2 1.0 N f:CYS11 3.8 21.4 1.0 CB f:CYS14 3.8 18.2 1.0 CA f:CYS11 4.0 21.4 1.0 CA f:CYS14 4.1 18.2 1.0 CA f:CYS27 4.4 16.9 1.0 C f:ASN13 4.4 23.5 1.0 CD2 f:HIS33 4.4 16.6 1.0 NE2 f:HIS33 4.4 16.6 1.0 C f:CYS11 4.5 21.4 1.0 CB f:ASN13 4.5 23.5 1.0 N f:ASN13 4.6 23.5 1.0 CA f:ASN13 4.7 23.5 1.0 O f:CYS11 4.7 21.4 1.0 N f:GLU30 4.8 19.7 1.0 CB f:GLU30 4.8 19.7 1.0 CB f:LEU10 4.9 16.8 1.0 O f:GLU30 4.9 19.7 1.0 C f:LEU10 5.0 16.8 1.0 CA f:HIS33 5.0 16.6 1.0

A.Scaiola, M.Leibundgut, D.Boehringer, P.Caspers, D.Bur, H.H.Locher, G.Rueedi, D.Ritz. Structural Basis of Translation Inhibition By Cadazolid, A Novel Quinoxolidinone Antibiotic. Sci Rep V. 9 5634 2019.
ISSN: ESSN 2045-2322
PubMed: 30948752
DOI: 10.1038/S41598-019-42155-4