Zinc in PDB 6qp4: Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis

The structure of Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis, PDB code: 6qp4 was solved by K.M.Mikula, R.Kolodziejczyk, A.Goldman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.639, 44.565, 128.436, 90.00, 92.07, 90.00
R / Rfree (%)	21.2 / 27.2

The structure of Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Zinc atom in the Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis (pdb code 6qp4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis, PDB code: 6qp4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn507 b:83.0 occ:1.00 OE1 A:GLN315 2.1 26.7 1.0 O C:HOH613 2.4 29.0 1.0 HE22 A:GLN315 3.0 37.5 1.0 CD A:GLN315 3.1 23.2 1.0 NE2 A:GLN315 3.4 31.3 1.0 O C:HOH643 3.9 29.8 1.0 OD2 C:ASP330 4.0 33.6 1.0 HG11 A:VAL317 4.0 33.0 1.0 HG12 A:VAL317 4.1 33.0 1.0 OD1 C:ASP330 4.1 30.1 1.0 HE21 A:GLN315 4.3 37.5 1.0 HG21 B:THR304 4.3 39.8 1.0 HG22 B:THR304 4.3 39.8 1.0 CG C:ASP330 4.4 30.1 1.0 CG A:GLN315 4.5 27.7 1.0 HB2 A:GLN315 4.5 28.1 1.0 HB3 A:GLN315 4.5 28.1 1.0 CG1 A:VAL317 4.5 27.5 1.0 CB A:GLN315 4.7 23.4 1.0 CG2 B:THR304 4.8 33.2 1.0 O A:HOH658 4.8 33.2 1.0 HG3 A:GLN315 4.9 33.2 1.0 HG13 A:VAL317 4.9 33.0 1.0

Zinc binding site 2 out of 2 in the Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of 299-452 Fragment of the USPA1 Protein From Moraxella Catarrhalis within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn508 b:0.7 occ:1.00 OE1 B:GLU357 3.9 45.3 1.0 OD1 C:ASP355 4.2 48.0 1.0 OE2 B:GLU357 4.2 43.6 1.0 HA2 C:GLY359 4.3 30.5 1.0 HA3 C:GLY359 4.3 30.5 1.0 O C:HOH663 4.4 41.1 1.0 CD B:GLU357 4.5 56.2 1.0 CA C:GLY359 4.7 25.4 1.0 OD2 C:ASP355 4.8 44.8 1.0 CG C:ASP355 4.8 40.9 1.0 O C:ASP355 5.0 31.7 1.0

K.M.Mikula, R.Kolodziejczyk, A.Goldman. Structure of the USPA1 Protein Fragment From Moraxella Catarrhalis Responsible For C3D Binding. J.Struct.Biol. V. 208 77 2019.
ISSN: ESSN 1095-8657
PubMed: 31400508
DOI: 10.1016/J.JSB.2019.08.002