Zinc in PDB 6qk5: Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia

The binding sites of Zinc atom in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia (pdb code 6qk5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia, PDB code: 6qk5:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 SG A:CYS31 2.4 0.0 1.0 SG A:CYS10 2.4 0.0 1.0 HB2 A:CYS27 2.4 0.0 1.0 SG A:CYS27 2.5 0.0 1.0 SG A:CYS14 2.6 0.0 1.0 HB3 A:CYS31 2.8 0.0 1.0 CB A:CYS27 2.9 0.0 1.0 CB A:CYS31 3.0 0.0 1.0 HB3 A:CYS27 3.2 0.0 1.0 HB3 A:CYS10 3.2 0.0 1.0 HB2 A:CYS31 3.3 0.0 1.0 HB2 A:CYS33 3.4 0.0 1.0 CB A:CYS10 3.4 0.0 1.0 H A:GLY28 3.4 0.0 1.0 HZ3 A:LYS37 3.8 0.0 1.0 CB A:CYS14 3.8 0.0 1.0 O A:GLY28 3.9 0.0 1.0 HB3 A:CYS14 3.9 0.0 1.0 ZN A:ZN103 3.9 0.0 1.0 HB2 A:CYS14 4.0 0.0 1.0 HD3 A:LYS37 4.0 0.0 1.0 ZN A:ZN102 4.0 0.0 1.0 HE2 A:LYS37 4.1 0.0 1.0 HA A:CYS10 4.2 0.0 1.0 N A:GLY28 4.2 0.0 1.0 HB2 A:CYS10 4.2 0.0 1.0 CA A:CYS27 4.3 0.0 1.0 H A:CYS33 4.3 0.0 1.0 CB A:CYS33 4.4 0.0 1.0 HB3 A:CYS33 4.4 0.0 1.0 SG A:CYS36 4.4 0.0 1.0 CA A:CYS10 4.4 0.0 1.0 H A:CYS31 4.4 0.0 1.0 CA A:CYS31 4.5 0.0 1.0 C A:CYS27 4.6 0.0 1.0 NZ A:LYS37 4.7 0.0 1.0 CE A:LYS37 4.7 0.0 1.0 HA A:CYS27 4.8 0.0 1.0 C A:GLY28 4.9 0.0 1.0 CD A:LYS37 4.9 0.0 1.0 N A:CYS31 4.9 0.0 1.0

Zinc binding site 2 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.0 occ:1.00 SG A:CYS14 2.3 0.0 1.0 SG A:CYS33 2.4 0.0 1.0 SG A:CYS19 2.5 0.0 1.0 HB3 A:CYS33 2.5 0.0 1.0 SG A:CYS36 2.5 0.0 1.0 CB A:CYS33 2.7 0.0 1.0 HB2 A:CYS33 2.8 0.0 1.0 HB2 A:CYS21 3.1 0.0 1.0 HA A:CYS14 3.2 0.0 1.0 CB A:CYS14 3.4 0.0 1.0 H A:CYS36 3.5 0.0 1.0 HB2 A:CYS19 3.5 0.0 1.0 CB A:CYS19 3.6 0.0 1.0 HB2 A:ALA35 3.7 0.0 1.0 HB2 A:CYS14 3.7 0.0 1.0 CA A:CYS14 3.7 0.0 1.0 O A:CYS14 3.8 0.0 1.0 HB3 A:CYS21 3.9 0.0 1.0 CB A:CYS21 3.9 0.0 1.0 CB A:CYS36 4.0 0.0 1.0 ZN A:ZN101 4.0 0.0 1.0 ZN A:ZN103 4.0 0.0 1.0 HB3 A:CYS36 4.0 0.0 1.0 HB3 A:CYS19 4.1 0.0 1.0 C A:CYS14 4.2 0.0 1.0 CA A:CYS33 4.2 0.0 1.0 N A:CYS36 4.3 0.0 1.0 HB3 A:CYS14 4.4 0.0 1.0 H A:ALA35 4.4 0.0 1.0 H A:LYS37 4.5 0.0 1.0 SG A:CYS21 4.5 0.0 1.0 H A:CYS21 4.5 0.0 1.0 SG A:CYS31 4.5 0.0 1.0 HD3 A:LYS37 4.7 0.0 1.0 HB2 A:CYS36 4.7 0.0 1.0 HA A:CYS33 4.7 0.0 1.0 CB A:ALA35 4.7 0.0 1.0 H A:CYS33 4.8 0.0 1.0 HB3 A:CYS27 4.8 0.0 1.0 CA A:CYS36 4.8 0.0 1.0 C A:CYS33 4.8 0.0 1.0 SG A:CYS27 4.8 0.0 1.0 CA A:CYS19 4.9 0.0 1.0 HA A:CYS19 4.9 0.0 1.0

Zinc binding site 3 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:0.0 occ:1.00 SG A:CYS27 2.3 0.0 1.0 SG A:CYS21 2.5 0.0 1.0 SG A:CYS25 2.5 0.0 1.0 HZ3 A:LYS37 2.5 0.0 1.0 SG A:CYS36 2.5 0.0 1.0 HB2 A:CYS36 2.7 0.0 1.0 HA A:CYS25 3.0 0.0 1.0 CB A:CYS36 3.0 0.0 1.0 H A:CYS27 3.1 0.0 1.0 HB3 A:CYS27 3.2 0.0 1.0 HB3 A:CYS21 3.3 0.0 1.0 HZ1 A:LYS37 3.3 0.0 1.0 HB3 A:CYS36 3.3 0.0 1.0 NZ A:LYS37 3.3 0.0 1.0 CB A:CYS27 3.4 0.0 1.0 CB A:CYS21 3.4 0.0 1.0 HD3 A:LYS37 3.5 0.0 1.0 CB A:CYS25 3.7 0.0 1.0 CA A:CYS25 3.7 0.0 1.0 HB2 A:CYS21 3.7 0.0 1.0 HD2 A:LYS37 3.8 0.0 1.0 HB2 A:CYS14 3.9 0.0 1.0 N A:CYS27 3.9 0.0 1.0 ZN A:ZN101 3.9 0.0 1.0 CD A:LYS37 4.0 0.0 1.0 ZN A:ZN102 4.0 0.0 1.0 HZ2 A:LYS37 4.1 0.0 1.0 SG A:CYS14 4.1 0.0 1.0 C A:CYS25 4.1 0.0 1.0 CE A:LYS37 4.2 0.0 1.0 HB2 A:CYS27 4.2 0.0 1.0 H A:GLN26 4.2 0.0 1.0 CA A:CYS27 4.2 0.0 1.0 HB2 A:CYS25 4.3 0.0 1.0 N A:GLN26 4.4 0.0 1.0 HB3 A:CYS25 4.4 0.0 1.0 CA A:CYS36 4.4 0.0 1.0 HE2 A:LYS37 4.5 0.0 1.0 CB A:CYS14 4.5 0.0 1.0 HB3 A:CYS33 4.6 0.0 1.0 O A:CYS25 4.7 0.0 1.0 H A:LYS37 4.8 0.0 1.0 CA A:CYS21 4.8 0.0 1.0 C A:CYS36 4.8 0.0 1.0 H A:CYS36 4.9 0.0 1.0 C A:CYS27 4.9 0.0 1.0 N A:CYS25 4.9 0.0 1.0 N A:LYS37 4.9 0.0 1.0 SG A:CYS31 5.0 0.0 1.0

Zinc binding site 4 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn104 b:0.0 occ:1.00 SG A:CYS39 2.3 0.0 1.0 SG A:CYS66 2.5 0.0 1.0 SG A:CYS58 2.5 0.0 1.0 SG A:CYS52 2.6 0.0 1.0 HZ1 A:LYS67 2.9 0.0 1.0 HB2 A:CYS66 3.2 0.0 1.0 HB2 A:CYS39 3.2 0.0 1.0 HE3 A:LYS67 3.3 0.0 1.0 CB A:CYS66 3.4 0.0 1.0 HB2 A:CYS52 3.4 0.0 1.0 CB A:CYS39 3.4 0.0 1.0 CB A:CYS52 3.6 0.0 1.0 ZN A:ZN105 3.6 0.0 1.0 ZN A:ZN106 3.7 0.0 1.0 HB3 A:CYS66 3.7 0.0 1.0 NZ A:LYS67 3.8 0.0 1.0 HB2 A:CYS58 3.8 0.0 1.0 SG A:CYS41 3.8 0.0 1.0 CB A:CYS58 3.8 0.0 1.0 SG A:CYS60 3.8 0.0 1.0 CE A:LYS67 3.9 0.0 1.0 HE2 A:LYS67 3.9 0.0 1.0 HA A:CYS58 3.9 0.0 1.0 HB2 A:CYS41 3.9 0.0 1.0 HB3 A:CYS52 4.0 0.0 1.0 HA A:CYS39 4.1 0.0 1.0 H A:GLY54 4.2 0.0 1.0 HZ3 A:LYS67 4.2 0.0 1.0 HB3 A:CYS39 4.2 0.0 1.0 H A:CYS41 4.3 0.0 1.0 CA A:CYS39 4.4 0.0 1.0 SG A:CYS48 4.4 0.0 1.0 CA A:CYS58 4.5 0.0 1.0 CB A:CYS41 4.5 0.0 1.0 HZ2 A:LYS67 4.5 0.0 1.0 H A:ASN40 4.6 0.0 1.0 H A:LYS59 4.6 0.0 1.0 H A:THR53 4.7 0.0 1.0 H A:CYS60 4.7 0.0 1.0 HB3 A:CYS58 4.7 0.0 1.0 O A:GLY54 4.7 0.0 1.0 HA A:PRO55 4.7 0.0 1.0 HB2 A:LYS50 4.8 0.0 1.0 CA A:CYS66 4.8 0.0 1.0 HB3 A:CYS48 4.9 0.0 1.0 CA A:CYS52 5.0 0.0 1.0

Zinc binding site 5 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn105 b:0.0 occ:1.00 SG A:CYS66 2.3 0.0 1.0 SG A:CYS64 2.4 0.0 1.0 SG A:CYS60 2.5 0.0 1.0 SG A:CYS48 2.5 0.0 1.0 HB3 A:CYS48 2.9 0.0 1.0 HB2 A:CYS48 3.0 0.0 1.0 CB A:CYS48 3.0 0.0 1.0 HB3 A:CYS64 3.1 0.0 1.0 HG3 A:LYS50 3.1 0.0 1.0 H A:CYS66 3.2 0.0 1.0 HG2 A:LYS50 3.3 0.0 1.0 HZ3 A:LYS67 3.3 0.0 1.0 CB A:CYS64 3.3 0.0 1.0 HZ1 A:LYS67 3.4 0.0 1.0 HB3 A:CYS66 3.5 0.0 1.0 CB A:CYS66 3.6 0.0 1.0 ZN A:ZN104 3.6 0.0 1.0 CG A:LYS50 3.6 0.0 1.0 HB2 A:LYS50 3.7 0.0 1.0 HB2 A:CYS60 3.7 0.0 1.0 HB2 A:CYS64 3.8 0.0 1.0 CB A:CYS60 3.8 0.0 1.0 NZ A:LYS67 3.9 0.0 1.0 ZN A:ZN106 4.0 0.0 1.0 N A:CYS66 4.0 0.0 1.0 SG A:CYS52 4.2 0.0 1.0 HB3 A:CYS60 4.2 0.0 1.0 H A:SER65 4.2 0.0 1.0 CB A:LYS50 4.2 0.0 1.0 HE3 A:LYS67 4.3 0.0 1.0 HG2 A:LYS67 4.3 0.0 1.0 H A:LYS50 4.4 0.0 1.0 HB2 A:CYS66 4.4 0.0 1.0 CA A:CYS66 4.4 0.0 1.0 CA A:CYS48 4.5 0.0 1.0 N A:SER65 4.6 0.0 1.0 HZ2 A:LYS67 4.6 0.0 1.0 CA A:CYS64 4.7 0.0 1.0 CE A:LYS67 4.7 0.0 1.0 HE3 A:LYS50 4.7 0.0 1.0 C A:CYS64 4.8 0.0 1.0 HE2 A:LYS50 4.9 0.0 1.0 H A:CYS48 4.9 0.0 1.0 HB3 A:LYS50 4.9 0.0 1.0 SG A:CYS58 4.9 0.0 1.0 H A:CYS60 4.9 0.0 1.0 HB2 A:SER65 5.0 0.0 1.0 CD A:LYS50 5.0 0.0 1.0 SG A:CYS41 5.0 0.0 1.0

Zinc binding site 6 out of 6 in the Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Solution Structure of the Zn-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn106 b:0.0 occ:1.00 SG A:CYS48 2.3 0.0 1.0 SG A:CYS41 2.3 0.0 1.0 SG A:CYS46 2.3 0.0 1.0 SG A:CYS52 2.3 0.0 1.0 H A:CYS48 2.6 0.0 1.0 H A:GLY49 2.9 0.0 1.0 H A:LYS50 3.1 0.0 1.0 H A:THR53 3.1 0.0 1.0 H A:CYS52 3.1 0.0 1.0 CB A:CYS41 3.4 0.0 1.0 HB3 A:CYS41 3.5 0.0 1.0 HB3 A:CYS66 3.5 0.0 1.0 H A:LYS47 3.5 0.0 1.0 CB A:CYS48 3.5 0.0 1.0 HB2 A:LYS50 3.5 0.0 1.0 N A:CYS48 3.5 0.0 1.0 HB3 A:CYS48 3.6 0.0 1.0 HB2 A:CYS41 3.6 0.0 1.0 ZN A:ZN104 3.7 0.0 1.0 H A:GLU51 3.7 0.0 1.0 N A:GLY49 3.8 0.0 1.0 N A:LYS50 3.9 0.0 1.0 CB A:CYS46 3.9 0.0 1.0 HA A:CYS46 3.9 0.0 1.0 ZN A:ZN105 4.0 0.0 1.0 CA A:CYS48 4.0 0.0 1.0 N A:CYS52 4.0 0.0 1.0 CB A:CYS52 4.0 0.0 1.0 N A:LYS47 4.0 0.0 1.0 N A:THR53 4.1 0.0 1.0 CB A:CYS66 4.2 0.0 1.0 SG A:CYS66 4.2 0.0 1.0 N A:GLU51 4.2 0.0 1.0 CA A:CYS46 4.3 0.0 1.0 C A:CYS48 4.3 0.0 1.0 HB2 A:CYS66 4.4 0.0 1.0 CB A:LYS50 4.4 0.0 1.0 HB2 A:CYS48 4.4 0.0 1.0 HG2 A:LYS50 4.4 0.0 1.0 C A:CYS46 4.5 0.0 1.0 HB3 A:CYS46 4.5 0.0 1.0 CA A:CYS52 4.5 0.0 1.0 HA A:THR53 4.5 0.0 1.0 CA A:LYS50 4.5 0.0 1.0 HB2 A:CYS46 4.6 0.0 1.0 HB3 A:CYS52 4.6 0.0 1.0 HB2 A:CYS52 4.6 0.0 1.0 C A:LYS47 4.6 0.0 1.0 SG A:CYS39 4.6 0.0 1.0 C A:LYS50 4.7 0.0 1.0 CA A:GLY49 4.8 0.0 1.0 HB2 A:LYS47 4.8 0.0 1.0 C A:GLY49 4.8 0.0 1.0 CA A:CYS41 4.8 0.0 1.0 C A:CYS52 4.8 0.0 1.0 H A:GLY54 4.9 0.0 1.0 CA A:LYS47 4.9 0.0 1.0 HA A:GLU51 4.9 0.0 1.0 CG A:LYS50 4.9 0.0 1.0 C A:GLU51 5.0 0.0 1.0 CA A:THR53 5.0 0.0 1.0 HA A:CYS48 5.0 0.0 1.0

A.Beil, S.Jurt, T.Schaefer, R.Walser, S.Atrian, M.Capedvila, P.Guentert, R.Dallinger, O.Zerbe. The Solution Structures of the Cd- and Zn-Loaded Metallothionein Species From Helix Pomatia To Be Published.