Zinc in PDB 6pqu: Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)

Other elements in 6pqu:

The structure of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) (pdb code 6pqu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc), PDB code: 6pqu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6pqu

Go back to Zinc Binding Sites List in 6pqu
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:0.7
occ:1.00
NE2 A:HIS408 2.0 99.5 1.0
NE2 A:HIS413 2.1 0.0 1.0
SG A:CYS243 2.3 0.4 1.0
SG A:CYS240 2.4 0.1 1.0
CE1 A:HIS408 2.6 99.5 1.0
CD2 A:HIS413 2.8 0.0 1.0
CB A:CYS240 3.0 0.1 1.0
CB A:CYS243 3.0 0.4 1.0
CE1 A:HIS413 3.1 0.0 1.0
CD2 A:HIS408 3.3 99.5 1.0
ND1 A:HIS408 3.9 99.5 1.0
N A:CYS243 3.9 0.4 1.0
CG A:HIS413 4.0 0.0 1.0
CA A:CYS243 4.1 0.4 1.0
ND1 A:HIS413 4.1 0.0 1.0
CG A:HIS408 4.2 99.5 1.0
CA A:CYS240 4.4 0.1 1.0
C A:CYS240 4.8 0.1 1.0
O A:CYS240 5.0 0.1 1.0

Zinc binding site 2 out of 2 in 6pqu

Go back to Zinc Binding Sites List in 6pqu
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn602

b:1.0
occ:1.00
NE2 E:HIS408 2.1 98.6 1.0
NE2 E:HIS413 2.1 0.3 1.0
SG E:CYS243 2.3 0.8 1.0
SG E:CYS240 2.4 0.8 1.0
CE1 E:HIS408 2.6 98.6 1.0
CD2 E:HIS413 2.8 0.3 1.0
CB E:CYS240 3.0 0.8 1.0
CB E:CYS243 3.0 0.8 1.0
CE1 E:HIS413 3.1 0.3 1.0
CD2 E:HIS408 3.3 98.6 1.0
ND1 E:HIS408 3.9 98.6 1.0
N E:CYS243 3.9 0.8 1.0
CG E:HIS413 4.0 0.3 1.0
CA E:CYS243 4.1 0.8 1.0
ND1 E:HIS413 4.1 0.3 1.0
CG E:HIS408 4.2 98.6 1.0
CA E:CYS240 4.4 0.8 1.0
C E:CYS240 4.8 0.8 1.0
O E:CYS240 5.0 0.8 1.0

Reference:

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7
Page generated: Wed Dec 16 12:32:02 2020

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