Atomistry » Zinc » PDB 6ogn-6oud » 6oq5
Atomistry »
  Zinc »
    PDB 6ogn-6oud »
      6oq5 »

Zinc in PDB 6oq5: Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs

Protein crystallography data

The structure of Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs, PDB code: 6oq5 was solved by P.Chen, K.Lam, R.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.91 / 3.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 149.619, 168.565, 179.921, 90.00, 90.00, 90.00
R / Rfree (%) 26.3 / 31.5

Other elements in 6oq5:

The structure of Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs (pdb code 6oq5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs, PDB code: 6oq5:

Zinc binding site 1 out of 1 in 6oq5

Go back to Zinc Binding Sites List in 6oq5
Zinc binding site 1 out of 1 in the Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Full-Length Clostridium Difficile Toxin B in Complex with 3 Vhhs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2801

b:0.6
occ:1.00
OD2 A:ASP547 2.1 0.8 1.0
ND1 A:HIS654 2.3 0.6 1.0
SG A:CYS699 2.4 0.2 1.0
NE2 A:HIS758 2.5 0.3 1.0
CG A:HIS654 2.8 0.9 1.0
CG A:ASP547 2.8 0.6 1.0
CD2 A:HIS758 3.0 0.7 1.0
CB A:HIS654 3.0 0.6 1.0
OD1 A:ASP547 3.1 0.2 1.0
CB A:CYS699 3.1 0.9 1.0
CE1 A:HIS654 3.1 0.4 1.0
CE1 A:HIS758 3.6 0.7 1.0
CD2 A:HIS654 3.7 0.5 1.0
NE2 A:HIS654 3.9 0.3 1.0
CB A:ASP547 4.0 0.2 1.0
CA A:HIS654 4.0 0.9 1.0
CG A:HIS758 4.2 0.2 1.0
CA A:CYS699 4.4 0.0 1.0
N A:CYS699 4.4 0.6 1.0
ND1 A:HIS758 4.5 0.7 1.0
OE1 A:GLU546 4.7 0.5 1.0
C A:HIS654 4.9 0.3 1.0
N A:GLY655 5.0 0.1 1.0
O A:GLY655 5.0 0.4 1.0

Reference:

P.Chen, K.H.Lam, Z.Liu, F.A.Mindlin, B.Chen, C.B.Gutierrez, L.Huang, Y.Zhang, T.Hamza, H.Feng, T.Matsui, M.E.Bowen, K.Perry, R.Jin. Structure of the Full-Length Clostridium Difficile Toxin B. Nat.Struct.Mol.Biol. V. 26 712 2019.
ISSN: ESSN 1545-9985
PubMed: 31308519
DOI: 10.1038/S41594-019-0268-0
Page generated: Wed Dec 16 12:27:21 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy