Zinc in PDB 6oet: Cryo-Em Structure of Mouse RAG1/2 Stc Complex

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex:
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Stc Complex also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (pdb code 6oet). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex, PDB code: 6oet:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1102 b:76.1 occ:1.00 NE2 A:HIS937 2.1 52.5 1.0 NE2 A:HIS942 2.2 53.9 1.0 SG A:CYS727 2.4 58.3 1.0 SG A:CYS730 2.4 56.6 1.0 CB A:CYS727 2.6 58.3 1.0 CD2 A:HIS937 2.7 52.5 1.0 CD2 A:HIS942 2.8 53.9 1.0 CE1 A:HIS937 2.9 52.5 1.0 CE1 A:HIS942 3.3 53.9 1.0 CG A:HIS937 3.7 52.5 1.0 ND1 A:HIS937 3.8 52.5 1.0 CB A:CYS730 3.8 56.6 1.0 CG A:HIS942 4.0 53.9 1.0 CA A:CYS727 4.1 58.3 1.0 ND1 A:HIS942 4.2 53.9 1.0 N A:CYS730 4.2 56.6 1.0 CA A:CYS730 4.6 56.6 1.0 CG2 A:THR732 4.7 58.2 1.0 O A:HIS937 4.8 52.5 1.0 CD2 A:HIS744 4.8 60.1 1.0 C A:CYS727 4.9 58.3 1.0 N A:CYS727 4.9 58.3 1.0 CB A:ALA941 4.9 53.7 1.0 O A:CYS730 4.9 56.6 1.0 CB A:HIS937 4.9 52.5 1.0 CG A:HIS744 4.9 60.1 1.0 CB A:LEU729 5.0 54.9 1.0 C A:HIS937 5.0 52.5 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1102 b:70.5 occ:1.00 NE2 C:HIS942 2.1 52.9 1.0 NE2 C:HIS937 2.2 48.9 1.0 SG C:CYS730 2.4 55.4 1.0 SG C:CYS727 2.4 52.7 1.0 CE1 C:HIS942 2.6 52.9 1.0 CB C:CYS727 2.6 52.7 1.0 CD2 C:HIS937 3.0 48.9 1.0 CE1 C:HIS937 3.2 48.9 1.0 CD2 C:HIS942 3.4 52.9 1.0 CB C:CYS730 3.5 55.4 1.0 ND1 C:HIS942 3.8 52.9 1.0 CA C:CYS727 4.2 52.7 1.0 CG C:HIS937 4.2 48.9 1.0 CG2 C:THR732 4.2 54.9 1.0 CG C:HIS942 4.2 52.9 1.0 ND1 C:HIS937 4.3 48.9 1.0 N C:CYS730 4.3 55.4 1.0 CA C:CYS730 4.4 55.4 1.0 CB C:HIS744 4.7 59.6 1.0 CG C:HIS744 4.7 59.6 1.0 N C:CYS727 4.9 52.7 1.0 C C:CYS730 4.9 55.4 1.0 C C:CYS727 4.9 52.7 1.0 CB C:THR732 4.9 54.9 1.0 CB C:ALA941 5.0 51.5 1.0 C C:LEU729 5.0 51.2 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cryo-Em Structure of Mouse RAG1/2 Stc Complex To Be Published.