Zinc in PDB 6oet: Cryo-Em Structure of Mouse RAG1/2 Stc Complex

Enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex:
2.3.2.27;

Other elements in 6oet:

The structure of Cryo-Em Structure of Mouse RAG1/2 Stc Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (pdb code 6oet). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex, PDB code: 6oet:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6oet

Go back to Zinc Binding Sites List in 6oet
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:76.1
occ:1.00
NE2 A:HIS937 2.1 52.5 1.0
NE2 A:HIS942 2.2 53.9 1.0
SG A:CYS727 2.4 58.3 1.0
SG A:CYS730 2.4 56.6 1.0
CB A:CYS727 2.6 58.3 1.0
CD2 A:HIS937 2.7 52.5 1.0
CD2 A:HIS942 2.8 53.9 1.0
CE1 A:HIS937 2.9 52.5 1.0
CE1 A:HIS942 3.3 53.9 1.0
CG A:HIS937 3.7 52.5 1.0
ND1 A:HIS937 3.8 52.5 1.0
CB A:CYS730 3.8 56.6 1.0
CG A:HIS942 4.0 53.9 1.0
CA A:CYS727 4.1 58.3 1.0
ND1 A:HIS942 4.2 53.9 1.0
N A:CYS730 4.2 56.6 1.0
CA A:CYS730 4.6 56.6 1.0
CG2 A:THR732 4.7 58.2 1.0
O A:HIS937 4.8 52.5 1.0
CD2 A:HIS744 4.8 60.1 1.0
C A:CYS727 4.9 58.3 1.0
N A:CYS727 4.9 58.3 1.0
CB A:ALA941 4.9 53.7 1.0
O A:CYS730 4.9 56.6 1.0
CB A:HIS937 4.9 52.5 1.0
CG A:HIS744 4.9 60.1 1.0
CB A:LEU729 5.0 54.9 1.0
C A:HIS937 5.0 52.5 1.0

Zinc binding site 2 out of 2 in 6oet

Go back to Zinc Binding Sites List in 6oet
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1102

b:70.5
occ:1.00
NE2 C:HIS942 2.1 52.9 1.0
NE2 C:HIS937 2.2 48.9 1.0
SG C:CYS730 2.4 55.4 1.0
SG C:CYS727 2.4 52.7 1.0
CE1 C:HIS942 2.6 52.9 1.0
CB C:CYS727 2.6 52.7 1.0
CD2 C:HIS937 3.0 48.9 1.0
CE1 C:HIS937 3.2 48.9 1.0
CD2 C:HIS942 3.4 52.9 1.0
CB C:CYS730 3.5 55.4 1.0
ND1 C:HIS942 3.8 52.9 1.0
CA C:CYS727 4.2 52.7 1.0
CG C:HIS937 4.2 48.9 1.0
CG2 C:THR732 4.2 54.9 1.0
CG C:HIS942 4.2 52.9 1.0
ND1 C:HIS937 4.3 48.9 1.0
N C:CYS730 4.3 55.4 1.0
CA C:CYS730 4.4 55.4 1.0
CB C:HIS744 4.7 59.6 1.0
CG C:HIS744 4.7 59.6 1.0
N C:CYS727 4.9 52.7 1.0
C C:CYS730 4.9 55.4 1.0
C C:CYS727 4.9 52.7 1.0
CB C:THR732 4.9 54.9 1.0
CB C:ALA941 5.0 51.5 1.0
C C:LEU729 5.0 51.2 1.0

Reference:

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cryo-Em Structure of Mouse RAG1/2 Stc Complex To Be Published.
Page generated: Wed Dec 16 12:26:17 2020

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