Zinc in PDB 6oes: Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) (pdb code 6oes). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain), PDB code: 6oes:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1102 b:53.8 occ:1.00 NE2 A:HIS937 2.2 35.1 1.0 NE2 A:HIS942 2.2 34.7 1.0 SG A:CYS727 2.4 35.2 1.0 SG A:CYS730 2.5 38.0 1.0 CB A:CYS727 2.8 35.2 1.0 CD2 A:HIS937 3.0 35.1 1.0 CD2 A:HIS942 3.1 34.7 1.0 CE1 A:HIS937 3.2 35.1 1.0 CE1 A:HIS942 3.2 34.7 1.0 CB A:CYS730 3.6 38.0 1.0 N A:CYS730 4.1 38.0 1.0 CG A:HIS937 4.2 35.1 1.0 ND1 A:HIS937 4.2 35.1 1.0 CG A:HIS942 4.3 34.7 1.0 CA A:CYS727 4.3 35.2 1.0 ND1 A:HIS942 4.3 34.7 1.0 CG2 A:THR732 4.3 38.8 1.0 CA A:CYS730 4.4 38.0 1.0 CB A:HIS744 4.6 42.4 1.0 C A:LEU729 4.8 35.4 1.0 CG A:HIS744 4.8 42.4 1.0 O A:CYS730 4.9 38.0 1.0 C A:CYS730 4.9 38.0 1.0 CB A:LEU729 4.9 35.4 1.0 CB A:ALA941 4.9 36.6 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1102 b:55.7 occ:1.00 NE2 C:HIS942 2.2 35.7 1.0 NE2 C:HIS937 2.2 35.4 1.0 SG C:CYS727 2.5 35.2 1.0 SG C:CYS730 2.5 37.3 1.0 CE1 C:HIS942 2.7 35.7 1.0 CE1 C:HIS937 3.0 35.4 1.0 CB C:CYS727 3.2 35.2 1.0 CD2 C:HIS937 3.3 35.4 1.0 CD2 C:HIS942 3.3 35.7 1.0 CB C:CYS730 3.4 37.3 1.0 ND1 C:HIS942 3.9 35.7 1.0 CB C:HIS744 4.2 43.5 1.0 ND1 C:HIS937 4.2 35.4 1.0 CG C:HIS942 4.2 35.7 1.0 N C:CYS730 4.2 37.3 1.0 CG2 C:THR732 4.3 37.6 1.0 CG C:HIS937 4.3 35.4 1.0 CG C:HIS744 4.4 43.5 1.0 CA C:CYS730 4.4 37.3 1.0 CA C:CYS727 4.6 35.2 1.0 ND1 C:HIS744 4.8 43.5 1.0 CD2 C:HIS744 4.8 43.5 1.0 CB C:ALA941 4.9 34.9 1.0 C C:CYS730 4.9 37.3 1.0 C C:LEU729 5.0 35.0 1.0 CB C:LEU729 5.0 35.0 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cryo-Em Structure of Mouse RAG1/2 Stc (Without Nbd Domain) To Be Published.