Zinc in PDB 6npo: Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain)

Protein crystallography data

The structure of Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain), PDB code: 6npo was solved by K.Michalska, N.Maltseva, M.Endres, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.63 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.542, 54.900, 82.917, 90.00, 106.21, 90.00
R / Rfree (%) 19.5 / 25.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain) (pdb code 6npo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain), PDB code: 6npo:

Zinc binding site 1 out of 1 in 6npo

Go back to Zinc Binding Sites List in 6npo
Zinc binding site 1 out of 1 in the Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:35.2
occ:1.00
OD2 A:ASP279 1.8 31.5 1.0
NE2 A:HIS539 2.0 31.7 1.0
CG A:ASP279 2.9 29.7 1.0
CE1 A:HIS539 2.9 31.9 1.0
CD2 A:HIS539 3.0 31.2 1.0
OD1 A:ASP279 3.4 28.3 1.0
O A:HOH736 3.9 28.0 1.0
ND1 A:HIS539 4.0 31.9 1.0
CG A:HIS539 4.1 31.9 1.0
CB A:ASP279 4.1 28.8 1.0
CG2 A:VAL540 4.1 31.6 1.0
O A:VAL51 4.7 34.7 1.0
CG A:LYS537 4.7 33.1 1.0
CB A:LYS537 4.8 33.5 1.0
CA A:ASP279 4.8 28.4 1.0

Reference:

K.Michalska, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Oligopeptide Abc Transporter From Bacillus Anthracis Str. Ames (Substrate-Binding Domain) To Be Published.
Page generated: Wed Dec 16 12:24:20 2020

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