Zinc in PDB 6noz: X-Ray Structure of Pedv Papain-Like Protease 2

The structure of X-Ray Structure of Pedv Papain-Like Protease 2, PDB code: 6noz was solved by J.C.Clasman, A.D.Mesecar, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.93 / 1.95
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	49.722, 65.672, 170.038, 90.00, 90.00, 90.00
R / Rfree (%)	14.5 / 19.3

The binding sites of Zinc atom in the X-Ray Structure of Pedv Papain-Like Protease 2 (pdb code 6noz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the X-Ray Structure of Pedv Papain-Like Protease 2, PDB code: 6noz:

Zinc binding site 1 out of 1 in the X-Ray Structure of Pedv Papain-Like Protease 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Pedv Papain-Like Protease 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:16.7 occ:1.00 ND1 A:HIS151 2.1 20.2 1.0 SG A:CYS149 2.3 13.5 1.0 SG A:CYS123 2.3 18.3 1.0 SG A:CYS124 2.3 15.6 1.0 CE1 A:HIS151 3.1 19.2 1.0 CG A:HIS151 3.1 16.0 1.0 CB A:CYS149 3.2 9.3 1.0 CB A:CYS124 3.4 17.7 1.0 CB A:HIS151 3.4 17.3 1.0 CB A:CYS123 3.4 23.5 1.0 N A:CYS124 3.7 18.9 1.0 C A:CYS123 3.8 25.0 1.0 N A:HIS151 3.9 13.8 1.0 CA A:CYS124 4.1 16.9 1.0 O A:CYS123 4.2 19.8 1.0 NE2 A:HIS151 4.2 21.0 1.0 CA A:CYS123 4.2 22.5 1.0 CD2 A:HIS151 4.3 15.5 1.0 CG2 A:THR119 4.3 8.0 1.0 CA A:HIS151 4.3 16.0 1.0 CD A:PRO150 4.3 11.5 1.0 N A:PRO150 4.4 11.7 1.0 OG1 A:THR119 4.5 15.0 1.0 CA A:CYS149 4.5 13.6 1.0 C A:CYS149 4.6 16.7 1.0 CB A:THR119 4.9 11.9 1.0 C A:PRO150 5.0 15.1 1.0

J.C.Clasman, A.D.Mesecar. Evaluating Ubiquitin Specificity of Papain-Like Protease 2 From Alphacoronaviruses Fipv and Pedv Using Structure-Guided Engineering To Be Published.