Zinc in PDB 6n9l: Crystal Structure of T. Maritima Uvra D117-399 with Adp

Protein crystallography data

The structure of Crystal Structure of T. Maritima Uvra D117-399 with Adp, PDB code: 6n9l was solved by S.Hartley, B.Case, M.Osuga, M.M.Hingorani, D.Jeruzalmi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.05 / 2.01
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.134, 81.379, 90.416, 90.00, 125.30, 90.00
R / Rfree (%) 16.9 / 20.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of T. Maritima Uvra D117-399 with Adp (pdb code 6n9l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of T. Maritima Uvra D117-399 with Adp, PDB code: 6n9l:

Zinc binding site 1 out of 1 in 6n9l

Go back to Zinc Binding Sites List in 6n9l
Zinc binding site 1 out of 1 in the Crystal Structure of T. Maritima Uvra D117-399 with Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of T. Maritima Uvra D117-399 with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:73.6
occ:1.00
SG A:CYS719 2.3 50.9 1.0
SG A:CYS716 2.4 64.2 1.0
SG A:CYS739 2.6 95.5 1.0
SG A:CYS742 2.6 72.6 1.0
O A:HOH1270 2.7 68.7 1.0
CB A:CYS719 2.9 66.9 1.0
CB A:CYS742 3.1 74.7 1.0
CB A:CYS716 3.2 61.9 1.0
CB A:CYS739 3.3 92.1 1.0
N A:CYS719 3.8 74.3 1.0
N A:CYS742 3.9 63.5 1.0
CA A:CYS719 4.0 71.8 1.0
CA A:CYS742 4.1 76.7 1.0
CA A:GLY723 4.5 93.6 1.0
CA A:CYS716 4.5 55.8 1.0
N A:GLY723 4.6 93.7 1.0
O A:CYS716 4.6 62.8 1.0
CA A:CYS739 4.7 89.2 1.0
CB A:VAL741 4.8 86.4 1.0
C A:CYS716 4.8 62.8 1.0
CB A:ALA718 4.9 80.1 1.0
C A:CYS719 4.9 75.6 1.0
C A:ALA718 4.9 72.8 1.0
C A:GLY723 4.9 94.5 1.0
C A:VAL741 5.0 83.8 1.0

Reference:

B.C.Case, S.Hartley, M.Osuga, D.Jeruzalmi, M.M.Hingorani. The Atpase Mechanism of UVRA2 Reveals the Distinct Roles of Proximal and Distal Atpase Sites in Nucleotide Excision Repair. Nucleic Acids Res. V. 47 4136 2019.
ISSN: ESSN 1362-4962
PubMed: 30892613
DOI: 10.1093/NAR/GKZ180
Page generated: Wed Dec 16 12:21:56 2020

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