Zinc in PDB 6n7l: Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1

Protein crystallography data

The structure of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1, PDB code: 6n7l was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.79 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.150, 168.290, 199.730, 90.00, 97.97, 90.00
R / Rfree (%) 14.9 / 19.1

Other elements in 6n7l:

The structure of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 (pdb code 6n7l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1, PDB code: 6n7l:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 24 in 6n7l

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Zinc binding site 1 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn413

b:30.0
occ:1.00
NE2 A:HIS66 2.1 30.4 1.0
O A:HOH567 2.2 20.1 1.0
SG A:CYS152 2.4 25.2 1.0
SG A:CYS43 2.4 26.7 1.0
CD2 A:HIS66 3.0 24.3 1.0
CE1 A:HIS66 3.1 27.7 1.0
C5N A:NAD402 3.3 22.6 1.0
CB A:CYS43 3.3 23.6 1.0
CB A:CYS152 3.4 23.7 1.0
OG1 A:THR45 3.8 26.6 1.0
CB A:THR45 3.8 26.3 1.0
C6N A:NAD402 3.9 23.0 1.0
C4N A:NAD402 4.0 24.5 1.0
CG A:HIS66 4.2 25.4 1.0
ND1 A:HIS66 4.2 28.0 1.0
O A:HOH703 4.5 19.9 1.0
CG2 A:THR45 4.6 25.1 1.0
CA A:CYS152 4.8 23.6 1.0
NH2 A:ARG335 4.8 24.9 1.0
CA A:CYS43 4.8 27.8 1.0
OE2 A:GLU67 4.8 33.4 1.0
N A:THR45 5.0 22.8 1.0
N1N A:NAD402 5.0 22.3 1.0

Zinc binding site 2 out of 24 in 6n7l

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Zinc binding site 2 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn414

b:25.7
occ:1.00
SG A:CYS96 2.3 24.8 1.0
SG A:CYS102 2.3 24.5 1.0
SG A:CYS110 2.3 26.1 1.0
SG A:CYS99 2.4 26.3 1.0
CB A:CYS110 3.2 21.0 1.0
CB A:CYS96 3.4 29.5 1.0
CB A:CYS99 3.4 29.2 1.0
CB A:CYS102 3.5 21.6 1.0
N A:CYS96 3.5 28.2 1.0
N A:GLY97 3.7 34.8 1.0
N A:CYS99 3.8 26.7 1.0
CA A:CYS96 3.8 30.0 1.0
CA A:CYS110 4.0 22.8 1.0
C A:CYS96 4.1 37.1 1.0
CA A:CYS99 4.2 29.1 1.0
N A:CYS102 4.2 20.5 1.0
O A:HOH620 4.3 31.0 1.0
N A:CYS98 4.3 28.6 1.0
O A:HOH729 4.3 35.6 1.0
CA A:CYS102 4.5 28.7 1.0
CA A:GLY97 4.7 24.3 1.0
C A:ALA95 4.7 31.7 1.0
CB A:ALA95 4.8 30.1 1.0
O A:HOH697 4.8 43.5 1.0
C A:CYS110 4.9 23.6 1.0
C A:CYS99 4.9 31.9 1.0
C A:GLY97 4.9 29.9 1.0
C A:CYS98 4.9 30.2 1.0

Zinc binding site 3 out of 24 in 6n7l

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Zinc binding site 3 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn409

b:29.4
occ:1.00
NE2 B:HIS66 2.0 32.1 1.0
SG B:CYS43 2.4 25.8 1.0
SG B:CYS152 2.4 26.1 1.0
O B:HOH643 2.4 23.8 1.0
CD2 B:HIS66 2.9 25.4 1.0
CE1 B:HIS66 3.0 30.4 1.0
CB B:CYS43 3.3 22.7 1.0
C5N B:NAD402 3.3 22.0 1.0
CB B:CYS152 3.5 22.4 1.0
CB B:THR45 3.9 22.1 1.0
OG1 B:THR45 4.0 26.0 1.0
C6N B:NAD402 4.0 22.7 1.0
CG B:HIS66 4.0 29.6 1.0
C4N B:NAD402 4.1 21.7 1.0
ND1 B:HIS66 4.1 28.6 1.0
CG2 B:THR45 4.6 22.7 1.0
O B:HOH711 4.6 22.3 1.0
CA B:CYS43 4.8 22.0 1.0
NH2 B:ARG335 4.8 24.6 1.0
CA B:CYS152 4.8 23.6 1.0
OE2 B:GLU67 4.8 30.6 1.0

Zinc binding site 4 out of 24 in 6n7l

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Zinc binding site 4 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn410

b:27.3
occ:1.00
SG B:CYS110 2.3 24.5 1.0
SG B:CYS102 2.3 23.2 1.0
SG B:CYS96 2.3 26.4 1.0
SG B:CYS99 2.3 23.9 1.0
CB B:CYS110 3.2 19.2 1.0
CB B:CYS96 3.3 25.5 1.0
CB B:CYS102 3.4 19.7 1.0
CB B:CYS99 3.4 23.9 1.0
N B:CYS96 3.6 21.6 1.0
N B:GLY97 3.7 30.0 1.0
CA B:CYS96 3.8 25.6 1.0
N B:CYS99 3.9 28.6 1.0
CA B:CYS110 4.0 19.8 1.0
N B:CYS102 4.1 21.2 1.0
C B:CYS96 4.2 30.4 1.0
CA B:CYS99 4.2 28.4 1.0
O B:HOH610 4.2 30.8 1.0
CA B:CYS102 4.4 24.2 1.0
N B:CYS98 4.4 25.9 1.0
O B:HOH735 4.6 37.3 1.0
C B:ALA95 4.7 28.0 1.0
CA B:GLY97 4.8 25.8 1.0
CB B:ALA95 4.8 28.4 1.0
C B:CYS110 4.9 21.5 1.0
C B:CYS99 4.9 25.4 1.0
O B:HOH707 4.9 39.7 1.0

Zinc binding site 5 out of 24 in 6n7l

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Zinc binding site 5 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn414

b:27.6
occ:1.00
NE2 C:HIS66 2.1 27.8 1.0
SG C:CYS152 2.3 21.8 1.0
SG C:CYS43 2.4 22.7 1.0
O C:HOH630 2.4 26.1 1.0
CD2 C:HIS66 2.9 20.8 1.0
CE1 C:HIS66 3.1 19.4 1.0
C5N C:NAD402 3.3 22.9 1.0
CB C:CYS43 3.3 21.1 1.0
CB C:CYS152 3.4 21.4 1.0
CB C:THR45 3.9 20.8 1.0
OG1 C:THR45 3.9 21.8 1.0
C6N C:NAD402 4.0 24.1 1.0
C4N C:NAD402 4.1 17.8 1.0
CG C:HIS66 4.1 22.1 1.0
ND1 C:HIS66 4.2 21.4 1.0
CG2 C:THR45 4.6 19.9 1.0
O C:HOH753 4.7 20.6 1.0
CA C:CYS152 4.8 22.4 1.0
CA C:CYS43 4.8 21.0 1.0
NH2 C:ARG335 4.8 25.4 0.9
OE2 C:GLU67 4.8 26.2 1.0
NH2 C:ARG335 4.9 23.9 0.1

Zinc binding site 6 out of 24 in 6n7l

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Zinc binding site 6 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn415

b:29.2
occ:1.00
SG C:CYS99 2.4 24.1 1.0
SG C:CYS110 2.4 24.4 1.0
SG C:CYS96 2.4 24.8 1.0
SG C:CYS102 2.4 24.3 1.0
CB C:CYS110 3.1 21.4 1.0
CB C:CYS96 3.3 26.1 1.0
CB C:CYS102 3.4 24.4 1.0
CB C:CYS99 3.5 24.9 1.0
N C:CYS96 3.6 26.4 1.0
N C:GLY97 3.7 28.0 1.0
N C:CYS99 3.8 33.1 1.0
CA C:CYS96 3.8 27.1 1.0
CA C:CYS110 3.9 22.4 1.0
C C:CYS96 4.2 33.4 1.0
CA C:CYS99 4.2 22.6 1.0
N C:CYS102 4.2 24.6 1.0
O C:HOH663 4.3 27.2 1.0
N C:CYS98 4.4 32.1 1.0
CA C:CYS102 4.4 29.1 1.0
O C:HOH599 4.5 34.1 1.0
CA C:GLY97 4.7 28.9 1.0
C C:ALA95 4.7 26.6 1.0
CB C:ALA95 4.8 21.9 1.0
O C:HOH749 4.8 37.2 1.0
C C:CYS110 4.8 23.4 1.0
C C:CYS99 4.9 30.0 1.0
C C:GLY97 4.9 31.5 1.0
O C:CYS99 5.0 28.1 1.0
C C:CYS98 5.0 29.1 1.0
N C:GLU111 5.0 23.6 1.0

Zinc binding site 7 out of 24 in 6n7l

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Zinc binding site 7 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn510

b:32.0
occ:1.00
NE2 D:HIS66 2.1 30.7 1.0
O D:HOH669 2.2 25.8 1.0
SG D:CYS152 2.4 28.2 1.0
SG D:CYS43 2.4 28.9 1.0
CD2 D:HIS66 3.0 30.5 1.0
C5N D:NAD501 3.2 23.6 1.0
CE1 D:HIS66 3.2 34.1 1.0
CB D:CYS43 3.3 23.2 1.0
CB D:CYS152 3.5 22.0 1.0
C6N D:NAD501 3.9 24.8 1.0
OG1 D:THR45 3.9 32.0 1.0
CB D:THR45 4.0 29.0 1.0
C4N D:NAD501 4.0 30.4 1.0
CG D:HIS66 4.2 31.6 1.0
ND1 D:HIS66 4.3 30.2 1.0
O D:HOH797 4.5 21.3 1.0
CG2 D:THR45 4.7 35.2 1.0
NH1 D:ARG335 4.7 24.0 0.8
NH2 D:ARG335 4.7 24.8 0.2
CA D:CYS43 4.7 28.4 1.0
CA D:CYS152 4.8 25.4 1.0
OE2 D:GLU67 4.9 35.1 1.0

Zinc binding site 8 out of 24 in 6n7l

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Zinc binding site 8 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn511

b:26.4
occ:1.00
SG D:CYS96 2.3 25.8 1.0
SG D:CYS102 2.3 27.0 1.0
SG D:CYS99 2.3 26.2 1.0
SG D:CYS110 2.4 25.0 1.0
CB D:CYS110 3.1 21.5 1.0
CB D:CYS99 3.3 29.7 1.0
CB D:CYS96 3.4 23.9 1.0
CB D:CYS102 3.5 22.3 1.0
N D:CYS96 3.5 30.5 1.0
N D:GLY97 3.7 27.4 1.0
CA D:CYS96 3.8 28.4 1.0
N D:CYS99 3.8 25.3 1.0
CA D:CYS110 4.0 26.1 1.0
CA D:CYS99 4.1 26.2 1.0
C D:CYS96 4.2 33.0 1.0
O D:HOH708 4.2 26.3 1.0
N D:CYS102 4.3 20.2 1.0
N D:CYS98 4.4 29.5 1.0
O D:HOH818 4.5 39.5 1.0
CA D:CYS102 4.5 23.9 1.0
C D:ALA95 4.7 32.6 1.0
CA D:GLY97 4.7 24.7 1.0
CB D:ALA95 4.8 20.1 1.0
C D:CYS110 4.8 25.7 1.0
C D:CYS99 4.8 26.1 1.0
O D:HOH795 4.8 33.0 1.0
C D:GLY97 4.9 29.3 1.0
C D:CYS98 5.0 27.0 1.0
O D:CYS99 5.0 28.9 1.0

Zinc binding site 9 out of 24 in 6n7l

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Zinc binding site 9 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn411

b:35.8
occ:1.00
NE2 E:HIS66 2.0 32.1 1.0
O E:HOH603 2.3 31.9 1.0
SG E:CYS152 2.4 29.3 1.0
SG E:CYS43 2.4 35.5 1.0
CD2 E:HIS66 3.0 31.2 1.0
CE1 E:HIS66 3.0 42.9 1.0
CB E:CYS43 3.3 34.0 1.0
C5N E:NAD402 3.4 25.9 1.0
CB E:CYS152 3.4 26.2 1.0
OG1 E:THR45 3.9 42.4 1.0
CB E:THR45 3.9 44.8 1.0
C4N E:NAD402 4.0 25.9 1.0
C6N E:NAD402 4.1 33.3 1.0
ND1 E:HIS66 4.1 34.4 1.0
CG E:HIS66 4.1 42.4 1.0
CG2 E:THR45 4.5 37.0 1.0
O E:HOH675 4.6 26.9 1.0
CA E:CYS152 4.8 27.6 1.0
CA E:CYS43 4.8 35.5 1.0
NH1 E:ARG335 4.9 33.9 0.9
NH2 E:ARG335 5.0 33.5 0.1

Zinc binding site 10 out of 24 in 6n7l

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Zinc binding site 10 out of 24 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn412

b:29.4
occ:1.00
SG E:CYS99 2.3 28.2 1.0
SG E:CYS110 2.3 27.4 1.0
SG E:CYS96 2.4 32.7 1.0
SG E:CYS102 2.5 27.2 1.0
CB E:CYS110 3.2 26.7 1.0
CB E:CYS96 3.3 33.4 1.0
CB E:CYS99 3.4 27.6 1.0
CB E:CYS102 3.5 28.0 1.0
N E:CYS96 3.6 30.4 1.0
N E:GLY97 3.7 36.2 1.0
N E:CYS99 3.8 32.7 1.0
CA E:CYS96 3.8 34.1 1.0
CA E:CYS110 4.0 32.7 1.0
C E:CYS96 4.1 36.5 1.0
CA E:CYS99 4.2 30.5 1.0
O E:HOH578 4.2 28.0 1.0
N E:CYS102 4.2 27.9 1.0
N E:CYS98 4.4 32.4 1.0
CA E:CYS102 4.4 25.0 1.0
CA E:GLY97 4.7 34.5 1.0
O E:HOH694 4.7 36.6 1.0
C E:ALA95 4.7 33.6 1.0
CB E:ALA95 4.7 33.4 1.0
C E:CYS110 4.8 25.6 1.0
O E:HOH673 4.9 34.9 1.0
C E:CYS99 4.9 27.8 1.0
C E:CYS98 4.9 34.1 1.0
C E:GLY97 4.9 37.5 1.0
N E:GLU111 5.0 26.7 1.0

Reference:

T.E.Edwards, D.M.Dranow, P.S.Horanyi, D.D.Lorimer, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 To Be Published.
Page generated: Wed Dec 16 12:21:45 2020

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