Zinc in PDB 6mut: Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System (pdb code 6mut). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System, PDB code: 6mut:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6mut

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Zinc binding site 1 out of 3 in the Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:76.7
occ:1.00
SG A:CYS413 2.4 49.0 1.0
SG A:CYS389 2.4 49.8 1.0
SG A:CYS416 2.4 46.1 1.0
SG A:CYS392 2.5 47.3 1.0
CB A:CYS389 3.6 49.8 1.0
CB A:CYS416 3.6 46.1 1.0
CB A:CYS413 3.7 49.0 1.0
N A:CYS392 3.8 47.3 1.0
CB A:CYS392 3.8 47.3 1.0
N A:CYS413 4.2 49.0 1.0
CA A:CYS392 4.3 47.3 1.0
O A:CYS392 4.3 47.3 1.0
OH A:TYR258 4.3 41.9 1.0
CB A:VAL391 4.4 44.8 1.0
CA A:CYS413 4.5 49.0 1.0
C A:CYS392 4.6 47.3 1.0
N A:CYS416 4.7 46.1 1.0
CA A:CYS416 4.7 46.1 1.0
N A:VAL391 4.8 44.8 1.0
C A:VAL391 4.8 44.8 1.0
CA A:VAL391 4.9 44.8 1.0
O A:CYS413 4.9 49.0 1.0

Zinc binding site 2 out of 3 in 6mut

Go back to Zinc Binding Sites List in 6mut
Zinc binding site 2 out of 3 in the Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:67.3
occ:1.00
NE2 C:HIS111 2.2 37.0 1.0
SG C:CYS122 2.3 42.3 1.0
SG C:CYS113 2.4 47.1 1.0
SG C:CYS125 2.4 36.6 1.0
CB C:CYS125 2.7 36.6 1.0
CB C:CYS122 2.7 42.3 1.0
CD2 C:HIS111 3.0 37.0 1.0
N C:CYS125 3.2 36.6 1.0
CE1 C:HIS111 3.2 37.0 1.0
CA C:CYS125 3.5 36.6 1.0
CB C:CYS113 3.6 47.1 1.0
N C:CYS113 4.1 47.1 1.0
CG C:HIS111 4.2 37.0 1.0
CA C:CYS122 4.2 42.3 1.0
CB C:VAL124 4.2 37.8 1.0
ND1 C:HIS111 4.3 37.0 1.0
C C:VAL124 4.3 37.8 1.0
CA C:CYS113 4.3 47.1 1.0
N C:VAL124 4.6 37.8 1.0
CA C:VAL124 4.6 37.8 1.0
C C:CYS125 4.7 36.6 1.0
C C:CYS122 4.8 42.3 1.0
CG1 C:VAL124 4.8 37.8 1.0
OH C:TYR84 4.9 51.5 1.0
CA C:ALA119 5.0 46.1 1.0

Zinc binding site 3 out of 3 in 6mut

Go back to Zinc Binding Sites List in 6mut
Zinc binding site 3 out of 3 in the Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Ternary Csm-Crrna-Target Rna with Anti-Tag Sequence Complex in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:0.8
occ:1.00
NE2 D:HIS111 2.2 67.7 1.0
SG D:CYS122 2.4 62.0 1.0
SG D:CYS113 2.4 64.4 1.0
SG D:CYS125 2.5 56.5 1.0
CD2 D:HIS111 3.0 67.7 1.0
CB D:CYS122 3.1 62.0 1.0
CE1 D:HIS111 3.2 67.7 1.0
CB D:CYS125 3.2 56.5 1.0
CB D:CYS113 3.5 64.4 1.0
N D:CYS113 3.8 64.4 1.0
N D:CYS125 3.9 56.5 1.0
CG D:HIS111 4.0 67.7 1.0
ND1 D:HIS111 4.1 67.7 1.0
CA D:CYS125 4.1 56.5 1.0
CA D:CYS113 4.2 64.4 1.0
CA D:CYS122 4.6 62.0 1.0
CB D:VAL124 4.6 58.8 1.0
C D:VAL112 4.7 59.5 1.0
OH D:TYR84 4.7 74.8 1.0
C D:VAL124 4.9 58.8 1.0
CA D:VAL112 5.0 59.5 1.0

Reference:

N.Jia, C.Y.Mo, C.Wang, E.T.Eng, L.A.Marraffini, D.J.Patel. Type III-A Crispr-Cas Csm Complexes: Assembly, Periodic Rna Cleavage, Dnase Activity Regulation, and Autoimmunity. Mol. Cell V. 73 264 2019.
ISSN: ISSN 1097-4164
PubMed: 30503773
DOI: 10.1016/J.MOLCEL.2018.11.007
Page generated: Wed Dec 16 12:20:37 2020

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