Zinc in PDB 6mjg: Structure of Dbophma in Complex with Sah and Methylated Peptide

The structure of Structure of Dbophma in Complex with Sah and Methylated Peptide, PDB code: 6mjg was solved by C.Ongpipattanakul, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.12
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	106.408, 107.975, 79.340, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.7

The binding sites of Zinc atom in the Structure of Dbophma in Complex with Sah and Methylated Peptide (pdb code 6mjg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Dbophma in Complex with Sah and Methylated Peptide, PDB code: 6mjg:

Zinc binding site 1 out of 1 in the Structure of Dbophma in Complex with Sah and Methylated Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dbophma in Complex with Sah and Methylated Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:63.8 occ:0.50 OD1 A:ASP273 2.5 48.5 1.0 ND1 A:HIS275 2.7 38.4 1.0 OD2 A:ASP273 2.9 52.0 1.0 CG A:ASP273 3.0 49.3 1.0 CG A:HIS275 3.6 38.3 1.0 CB A:HIS275 3.7 38.9 1.0 CE1 A:HIS275 3.7 36.6 1.0 O A:HOH684 3.8 44.2 1.0 N A:HIS275 4.3 41.1 1.0 CB A:ASP273 4.5 46.7 1.0 CA A:HIS275 4.6 41.2 1.0 OG1 A:THR276 4.7 50.7 1.0 CD2 A:HIS275 4.8 40.2 1.0 NE2 A:HIS275 4.8 42.0 1.0 N A:LYS274 4.9 45.6 1.0

C.Ongpipattanakul, S.K.Nair. Molecular Basis For Autocatalytic Backbone N-Methylation in Ripp Natural Product Biosynthesis. Acs Chem. Biol. V. 13 2989 2018.
ISSN: ESSN 1554-8937
PubMed: 30204409
DOI: 10.1021/ACSCHEMBIO.8B00668