Zinc in PDB 6m6s: Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna

The structure of Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna, PDB code: 6m6s was solved by K.Li, J.Zheng, M.Wirawan, Z.Xiong, O.Fedorova, P.Griffin, A.Plyle, D.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.03 / 1.60
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	33.775, 93.09, 133.823, 90, 90, 90
R / Rfree (%)	16.9 / 19.9

The binding sites of Zinc atom in the Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna (pdb code 6m6s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna, PDB code: 6m6s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1201 b:13.3 occ:1.00 SG A:CYS955 2.3 14.2 1.0 SG A:CYS1007 2.3 11.8 1.0 SG A:CYS1010 2.3 14.1 1.0 SG A:CYS952 2.4 12.9 1.0 CB A:CYS952 3.1 11.3 1.0 CB A:CYS1007 3.2 11.3 1.0 CB A:CYS1010 3.2 19.4 1.0 CB A:CYS955 3.4 17.0 1.0 N A:CYS1010 3.7 12.7 1.0 N A:CYS955 3.8 14.1 1.0 CA A:CYS1010 4.1 16.4 1.0 CA A:CYS955 4.1 14.6 1.0 CB A:ASN954 4.6 16.2 1.0 CA A:CYS1007 4.6 10.4 1.0 CA A:CYS952 4.6 9.1 1.0 CB A:HIS1009 4.8 15.9 1.0 C A:CYS1010 4.8 16.5 1.0 ND2 A:ASN954 4.8 23.3 1.0 C A:HIS1009 4.9 14.6 1.0 C A:CYS955 4.9 14.1 1.0 C A:ASN954 4.9 19.6 1.0 N A:LYS1011 4.9 13.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain with 5'-Ppp 12-Mer Dsrna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1201 b:23.3 occ:1.00 SG B:CYS955 2.2 26.3 1.0 SG B:CYS1010 2.3 22.6 1.0 SG B:CYS1007 2.3 21.2 1.0 SG B:CYS952 2.4 22.8 1.0 CB B:CYS1007 3.1 18.1 1.0 CB B:CYS952 3.2 21.3 1.0 CB B:CYS1010 3.3 25.2 1.0 CB B:CYS955 3.4 28.9 1.0 N B:CYS955 3.8 23.9 1.0 N B:CYS1010 3.8 24.9 1.0 CA B:CYS1010 4.1 26.1 1.0 CA B:CYS955 4.1 23.0 1.0 CA B:CYS1007 4.6 16.1 1.0 CB B:HIS1009 4.6 31.9 1.0 CB B:ASN954 4.6 24.8 1.0 CA B:CYS952 4.6 17.7 1.0 C B:ASN954 4.7 29.9 1.0 C B:CYS1010 4.8 21.5 1.0 C B:CYS955 4.8 24.3 1.0 CB B:LYS957 4.8 26.8 1.0 N B:LYS1011 4.9 18.4 1.0 C B:HIS1009 4.9 27.9 1.0

K.Li, J.Zheng, M.Wirawan, Z.Xiong, O.Fedorova, P.Griffin, A.Plyle, D.Luo. Crystal Structure of Caenorhabditis Elegans Dicer-Related Helicase 3 (Drh-3) C-Terminal Domain To Be Published.