Zinc in PDB 6m5r: The Coordinates of the Apo Monomeric Terminase Complex

The binding sites of Zinc atom in the The Coordinates of the Apo Monomeric Terminase Complex (pdb code 6m5r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Coordinates of the Apo Monomeric Terminase Complex, PDB code: 6m5r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Coordinates of the Apo Monomeric Terminase Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Coordinates of the Apo Monomeric Terminase Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn801 b:51.5 occ:1.00 CE1 B:HIS124 2.2 25.9 1.0 CD2 C:HIS103 2.3 30.6 1.0 SG B:CYS121 2.3 29.7 1.0 SG C:CYS101 2.3 44.3 1.0 NE2 B:HIS124 2.7 25.9 1.0 NE2 C:HIS103 3.0 30.6 1.0 ND1 B:HIS124 3.2 25.9 1.0 CB B:CYS121 3.3 29.7 1.0 CG C:HIS103 3.4 30.6 1.0 CD2 B:HIS124 3.9 25.9 1.0 CB C:CYS101 4.0 44.3 1.0 O B:CYS121 4.0 29.7 1.0 CG B:HIS124 4.1 25.9 1.0 CB C:HIS103 4.2 30.6 1.0 CE1 C:HIS103 4.2 30.6 1.0 ND1 C:HIS103 4.4 30.6 1.0 N C:HIS103 4.5 30.6 1.0 CA B:CYS121 4.6 29.7 1.0 O B:TYR123 4.6 26.0 1.0 C B:CYS121 4.7 29.7 1.0 CA C:CYS101 4.7 44.3 1.0 N C:VAL102 4.7 31.4 1.0 OH C:TYR81 4.8 28.1 1.0 CB B:TYR123 4.9 26.0 1.0 C B:TYR123 4.9 26.0 1.0

Zinc binding site 2 out of 2 in the The Coordinates of the Apo Monomeric Terminase Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Coordinates of the Apo Monomeric Terminase Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn802 b:58.7 occ:1.00 O B:CYS223 2.0 34.3 1.0 SG B:CYS197 2.3 30.6 1.0 CB B:CYS200 2.4 34.0 1.0 CA B:CYS223 2.4 34.3 1.0 C B:CYS223 2.5 34.3 1.0 ND1 B:HIS225 2.6 27.7 1.0 CB B:CYS223 2.6 34.3 1.0 SG B:CYS200 2.6 34.0 1.0 CE1 B:HIS225 3.4 27.7 1.0 SG B:CYS223 3.5 34.3 1.0 CG B:HIS225 3.7 27.7 1.0 CA B:CYS200 3.7 34.0 1.0 N B:CYS197 3.8 30.6 1.0 N B:CYS200 3.8 34.0 1.0 N B:CYS223 3.8 34.3 1.0 CB B:CYS197 3.8 30.6 1.0 N B:ASN224 3.9 31.2 1.0 CB B:HIS225 4.0 27.7 1.0 N B:HIS225 4.2 27.7 1.0 CA B:CYS197 4.4 30.6 1.0 NE2 B:HIS225 4.6 27.7 1.0 CD2 B:HIS225 4.7 27.7 1.0 CA B:HIS225 4.8 27.7 1.0 C B:CYS200 4.8 34.0 1.0 C B:ASN224 4.8 31.2 1.0 CA B:ASN224 4.8 31.2 1.0 CG1 B:VAL199 4.8 31.3 1.0 C B:PRO196 4.9 29.0 1.0 CA B:PRO196 4.9 29.0 1.0 C B:ILE222 4.9 35.9 1.0 C B:VAL199 4.9 31.3 1.0 C B:CYS197 5.0 30.6 1.0

Y.Yang, P.Yang, N.Wang, Z.Chen, D.Su, Z.H.Zhou, Z.Rao, X.Wang. Architecture of the Herpesvirus Genome-Packaging Complex and Implications For Dna Translocation. Protein Cell V. 11 339 2020.
ISSN: ESSN 1674-8018
PubMed: 32328903
DOI: 10.1007/S13238-020-00710-0