Zinc in PDB 6lzg: Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2

Enzymatic activity of Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2

All present enzymatic activity of Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2, PDB code: 6lzg was solved by Q.H.Wang, H.Song, J.X.Qi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.50 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.448, 104.448, 229.786, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2 (pdb code 6lzg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2, PDB code: 6lzg:

Zinc binding site 1 out of 1 in 6lzg

Go back to Zinc Binding Sites List in 6lzg
Zinc binding site 1 out of 1 in the Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn704

b:38.3
occ:1.00
 OE2 A:GLU402 2.0 38.7 1.0
NE2 A:HIS374 2.1 33.2 1.0
NE2 A:HIS378 2.1 27.4 1.0
O A:HOH911 2.5 39.0 1.0
CD A:GLU402 2.7 38.3 1.0
OE1 A:GLU402 2.8 39.1 1.0
CE1 A:HIS374 3.0 29.6 1.0
CE1 A:HIS378 3.0 24.8 1.0
CD2 A:HIS378 3.1 24.8 1.0
CD2 A:HIS374 3.2 32.6 1.0
ND1 A:HIS374 4.1 30.3 1.0
CG A:GLU402 4.1 39.4 1.0
OE1 A:GLU375 4.1 41.7 1.0
ND1 A:HIS378 4.2 22.1 1.0
CG A:HIS374 4.2 28.9 1.0
CG A:HIS378 4.2 21.1 1.0
O A:HOH987 4.5 36.4 1.0
O A:HOH981 4.5 37.4 1.0
OE2 A:GLU375 4.8 40.5 1.0
CD A:GLU375 4.8 37.6 1.0
CA A:GLU402 4.8 29.2 1.0

Reference:

Q.H.Wang, H.Song, J.X.Qi. Structure of Novel Coronavirus Spike Receptor-Binding Domain Complexed with Its Receptor ACE2 To Be Published.
Page generated: Wed Dec 16 12:17:25 2020

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