Zinc in PDB 6ljh: Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+

Protein crystallography data

The structure of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+, PDB code: 6ljh was solved by X.Feng, S.Fan, M.Li, S.Zou, G.Lv, G.Wu, Y.Jin, Z.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.54 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 94.446, 54.153, 90.374, 90.00, 101.28, 90.00
R / Rfree (%) 15.2 / 18

Other elements in 6ljh:

The structure of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+ also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+ (pdb code 6ljh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+, PDB code: 6ljh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ljh

Go back to Zinc Binding Sites List in 6ljh
Zinc binding site 1 out of 2 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:16.2
occ:1.00
SG A:CYS105 2.3 17.4 1.0
SG A:CYS102 2.3 13.7 1.0
SG A:CYS113 2.3 14.0 1.0
SG A:CYS99 2.4 16.3 1.0
CB A:CYS113 3.3 13.9 1.0
CB A:CYS105 3.3 12.8 1.0
CB A:CYS102 3.4 15.7 1.0
CB A:CYS99 3.5 15.7 1.0
N A:CYS99 3.5 16.4 1.0
CA A:CYS113 3.7 12.9 1.0
N A:CYS102 3.8 17.6 1.0
N A:GLY100 3.9 16.3 1.0
CA A:CYS99 3.9 15.7 1.0
N A:HIS114 4.0 12.3 1.0
CA A:CYS102 4.2 15.4 1.0
C A:CYS99 4.3 24.0 1.0
N A:CYS105 4.3 14.0 1.0
C A:CYS113 4.3 10.6 1.0
N A:VAL115 4.4 14.5 1.0
CA A:CYS105 4.4 16.0 1.0
N A:GLN101 4.4 16.0 1.0
CG2 A:VAL115 4.6 16.5 1.0
O A:HOH793 4.6 22.7 1.0
CB A:VAL115 4.6 16.6 1.0
C A:GLU98 4.7 17.0 1.0
CA A:GLY100 4.8 20.7 1.0
C A:CYS102 4.9 15.7 1.0
CA A:GLU98 5.0 16.8 1.0
C A:GLN101 5.0 26.1 1.0

Zinc binding site 2 out of 2 in 6ljh

Go back to Zinc Binding Sites List in 6ljh
Zinc binding site 2 out of 2 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua in Complex with Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:15.1
occ:1.00
OE2 A:GLU70 2.0 12.3 1.0
NE2 A:HIS69 2.0 13.7 1.0
SG A:CYS48 2.3 15.0 1.0
SG A:CYS177 2.3 15.0 1.0
CE1 A:HIS69 2.9 17.1 1.0
CD A:GLU70 3.0 14.2 1.0
CD2 A:HIS69 3.1 12.2 1.0
CB A:CYS48 3.2 15.3 1.0
CB A:CYS177 3.2 19.4 1.0
CG A:GLU70 3.4 11.3 1.0
O A:HOH546 3.8 13.6 1.0
C4N A:NAD401 3.9 18.4 1.0
ND1 A:HIS69 4.1 13.0 1.0
OE1 A:GLU70 4.2 15.3 1.0
CG A:HIS69 4.2 14.3 1.0
O A:HOH549 4.3 15.4 1.0
CA A:CYS48 4.4 15.9 1.0
O A:HOH872 4.5 28.1 1.0
N A:CYS48 4.5 9.2 1.0
C5N A:NAD401 4.5 49.2 1.0
O A:HOH854 4.6 33.4 1.0
O7N A:NAD401 4.7 63.6 1.0
CA A:CYS177 4.7 17.9 1.0
N A:GLY178 4.8 14.4 1.0
CB A:GLU70 4.9 12.4 1.0
CB A:THR50 5.0 24.5 0.7
OG1 A:THR50 5.0 16.1 0.7
CG2 A:THR50 5.0 16.1 0.3

Reference:

Z.Yang, X.Feng, S.Fan, M.Li, S.Zou, G.Lv, G.Wu, Y.Jin, Z.Yang. N/A N/A.
Page generated: Mon Jan 25 16:32:55 2021

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