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Zinc in PDB 6klh: Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter

Enzymatic activity of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter

All present enzymatic activity of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter:
2.7.7.48;

Other elements in 6klh:

The structure of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter (pdb code 6klh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter, PDB code: 6klh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6klh

Go back to Zinc Binding Sites List in 6klh
Zinc binding site 1 out of 2 in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2302

b:0.1
occ:1.00
ND1 A:HIS472 2.3 0.2 1.0
SG A:CYS284 2.4 0.6 1.0
SG A:CYS470 2.4 0.7 1.0
SG A:CYS287 2.4 0.1 1.0
CB A:CYS287 2.8 0.1 1.0
CE1 A:HIS472 3.1 0.2 1.0
CB A:CYS470 3.4 0.7 1.0
CG A:HIS472 3.5 0.2 1.0
N A:CYS287 3.6 0.1 1.0
CA A:CYS287 3.8 0.1 1.0
CB A:HIS472 4.0 0.2 1.0
CB A:CYS284 4.1 0.6 1.0
CA A:CYS470 4.2 0.7 1.0
NE2 A:HIS472 4.3 0.2 1.0
CD2 A:HIS472 4.5 0.2 1.0
N A:ARG471 4.5 0.5 1.0
C A:PHE286 4.6 0.2 1.0
CB A:PHE286 4.7 0.2 1.0
C A:CYS470 4.7 0.7 1.0
CA A:CYS284 4.8 0.6 1.0

Zinc binding site 2 out of 2 in 6klh

Go back to Zinc Binding Sites List in 6klh
Zinc binding site 2 out of 2 in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn2302

b:0.5
occ:1.00
ND1 C:HIS472 2.3 92.6 1.0
SG C:CYS284 2.4 90.8 1.0
SG C:CYS470 2.4 0.5 1.0
SG C:CYS287 2.4 81.0 1.0
CB C:CYS287 2.8 81.0 1.0
CE1 C:HIS472 3.1 92.6 1.0
CB C:CYS470 3.4 0.5 1.0
CG C:HIS472 3.5 92.6 1.0
N C:CYS287 3.6 81.0 1.0
CA C:CYS287 3.8 81.0 1.0
CB C:HIS472 4.0 92.6 1.0
CB C:CYS284 4.1 90.8 1.0
CA C:CYS470 4.2 0.5 1.0
NE2 C:HIS472 4.3 92.6 1.0
CD2 C:HIS472 4.5 92.6 1.0
N C:ARG471 4.5 97.7 1.0
C C:PHE286 4.6 76.7 1.0
CB C:PHE286 4.7 76.7 1.0
C C:CYS470 4.8 0.5 1.0
CA C:CYS284 4.9 90.8 1.0

Reference:

R.Peng, X.Xu, J.Jing, Q.Peng, G.F.Gao, Y.Shi. Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter To Be Published.
Page generated: Wed Dec 16 12:07:49 2020

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