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Zinc in PDB 6kj5: Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus

Enzymatic activity of Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus

All present enzymatic activity of Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus:
1.1.1.324;

Protein crystallography data

The structure of Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus, PDB code: 6kj5 was solved by A.S.Sandholu, P.M.Sharmila, H.V.Thulasiram, K.A.Kulkarni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.60 / 3.75
Space group P 32 1 2
Cell size a, b, c (Å), α, β, γ (°) 53.385, 53.385, 253.802, 90.00, 90.00, 120.00
R / Rfree (%) 22 / 27.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus (pdb code 6kj5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus, PDB code: 6kj5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6kj5

Go back to Zinc Binding Sites List in 6kj5
Zinc binding site 1 out of 2 in the Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
NE2 A:HIS72 2.2 79.6 1.0
SG A:CYS50 2.2 85.8 1.0
SG A:CYS166 2.4 77.6 1.0
CE1 A:HIS72 2.7 78.9 1.0
OG A:SER52 2.8 78.3 1.0
CB A:SER52 3.2 74.1 1.0
CD2 A:HIS72 3.4 76.2 1.0
CB A:CYS50 3.5 73.2 1.0
CB A:CYS166 3.6 67.9 1.0
ND1 A:HIS72 4.0 73.8 1.0
SG A:CYS98 4.2 89.3 1.0
CG A:HIS72 4.3 71.2 1.0
CA A:SER52 4.5 74.7 1.0
N A:SER52 4.5 75.7 1.0
CA A:CYS50 4.8 70.5 1.0

Zinc binding site 2 out of 2 in 6kj5

Go back to Zinc Binding Sites List in 6kj5
Zinc binding site 2 out of 2 in the Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.2
occ:1.00
SG A:CYS117 2.2 69.1 1.0
CB A:CYS103 2.3 93.7 1.0
SG A:CYS109 2.3 88.6 1.0
SG A:CYS103 2.4 0.0 1.0
SG A:CYS106 2.6 0.7 1.0
N A:CYS103 3.1 86.7 1.0
CA A:CYS103 3.2 92.0 1.0
CB A:CYS117 3.2 69.2 1.0
CB A:CYS106 3.5 0.8 1.0
CB A:CYS109 3.6 93.0 1.0
N A:ARG104 3.8 0.3 1.0
N A:CYS106 3.9 0.3 1.0
C A:CYS103 4.0 94.4 1.0
CA A:CYS117 4.3 68.6 1.0
CA A:CYS106 4.3 0.7 1.0
N A:LYS105 4.3 0.4 1.0
C A:SER102 4.3 83.5 1.0
N A:CYS109 4.5 0.3 1.0
CA A:CYS109 4.6 96.5 1.0
CB A:SER102 4.7 78.7 1.0
CA A:ARG104 4.9 0.3 1.0
N A:GLY119 4.9 75.3 1.0
C A:LYS105 5.0 0.8 1.0

Reference:

A.S.Sandholu, S.P.Mujawar, H.V.Thulasiram, K.A.Kulkarni. Crystal Structure of 10-Hydroxygeraniol Dehydrogenase Apo Form From Cantharanthus Roseus To Be Published.
Page generated: Wed Dec 16 12:07:33 2020

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