Zinc in PDB 6k4x: Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb

All present enzymatic activity of Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb:
3.5.2.6;

The structure of Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb, PDB code: 6k4x was solved by J.Wachino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.50 / 1.17
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	36.997, 41.682, 45.660, 108.75, 102.79, 105.86
R / Rfree (%)	12.9 / 15.1

The binding sites of Zinc atom in the Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb (pdb code 6k4x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb, PDB code: 6k4x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:6.3 occ:1.00 NE2 A:HIS150 2.0 6.7 1.0 NE2 A:HIS72 2.0 6.3 1.0 ND1 A:HIS74 2.1 6.4 1.0 S1 A:D0U304 2.3 6.3 1.0 CD2 A:HIS150 3.0 6.5 1.0 CE1 A:HIS74 3.0 5.7 1.0 CD2 A:HIS72 3.0 5.6 1.0 CE1 A:HIS72 3.0 6.5 1.0 CE1 A:HIS150 3.1 6.2 1.0 CG A:HIS74 3.1 6.3 1.0 C4 A:D0U304 3.2 6.7 1.0 O2 A:D0U304 3.3 6.8 1.0 CB A:HIS74 3.5 6.2 1.0 ZN A:ZN302 3.7 6.5 1.0 C7 A:D0U304 3.8 6.5 1.0 C3 A:D0U304 3.8 6.7 1.0 ND1 A:HIS72 4.1 6.4 1.0 CG A:HIS72 4.1 5.4 1.0 NE2 A:HIS74 4.1 6.4 1.0 CG A:HIS150 4.1 5.9 1.0 C5 A:D0U304 4.1 7.6 1.0 ND1 A:HIS150 4.2 6.0 1.0 CD2 A:HIS74 4.2 6.4 1.0 NE2 A:GLN113 4.2 8.1 1.0 CD2 A:HIS77 4.2 6.2 1.0 OD1 A:ASP76 4.3 7.2 1.0 NE2 A:HIS77 4.3 6.1 1.0 O1 A:D0U304 4.8 7.7 1.0 O A:HOH633 4.9 14.2 1.0 CA A:HIS74 4.9 6.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Smb-1 Metallo-Beta-Lactamase in A Complex with Asb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:6.5 occ:1.00 NE2 A:HIS77 2.0 6.1 1.0 NE2 A:HIS215 2.0 6.7 1.0 OD2 A:ASP76 2.1 6.4 1.0 O2 A:D0U304 2.3 6.8 1.0 S1 A:D0U304 2.4 6.3 1.0 CG A:ASP76 2.9 5.9 1.0 CE1 A:HIS77 3.0 6.1 1.0 CD2 A:HIS77 3.0 6.2 1.0 CE1 A:HIS215 3.0 6.4 1.0 CD2 A:HIS215 3.0 6.1 1.0 C7 A:D0U304 3.1 6.5 1.0 OD1 A:ASP76 3.1 7.2 1.0 C4 A:D0U304 3.1 6.7 1.0 C3 A:D0U304 3.4 6.7 1.0 O A:HOH688 3.4 24.3 1.0 ZN A:ZN301 3.7 6.3 1.0 ND1 A:HIS77 4.1 6.0 1.0 ND1 A:HIS215 4.1 6.4 1.0 CG A:HIS77 4.1 6.8 1.0 CG A:HIS215 4.2 6.1 1.0 NE2 A:HIS72 4.2 6.3 1.0 CE1 A:HIS72 4.2 6.5 1.0 O1 A:D0U304 4.2 7.7 1.0 CB A:ASP76 4.3 5.9 1.0 C5 A:D0U304 4.3 7.6 1.0 OG A:SER175 4.4 7.7 1.0 C2 A:D0U304 4.7 7.6 1.0 O A:HOH755 4.7 21.3 1.0 CD1 A:ILE26 4.9 7.5 1.0 O A:HOH633 5.0 14.2 1.0 NE2 A:HIS150 5.0 6.7 1.0

J.Wachino, J.Wachino. N/A N/A.