Zinc in PDB 6k3k: Solution Structure of APOBEC3G-CD2 with Ssdna, Product B

The structure of Solution Structure of APOBEC3G-CD2 with Ssdna, Product B also contains other interesting chemical elements:

Iodine

(I)

20 atoms

The binding sites of Zinc atom in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product B (pdb code 6k3k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product B, PDB code: 6k3k:

Zinc binding site 1 out of 1 in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of APOBEC3G-CD2 with Ssdna, Product B within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS257 2.0 0.0 1.0 SG A:CYS288 2.3 0.0 1.0 SG A:CYS291 2.3 0.0 1.0 CG A:HIS257 2.7 0.0 1.0 HB3 A:HIS257 2.7 0.0 1.0 HB2 A:LEU260 2.8 0.0 1.0 HB2 A:HIS257 2.9 0.0 1.0 CB A:HIS257 2.9 0.0 1.0 CE1 A:HIS257 3.0 0.0 1.0 HB3 A:CYS288 3.1 0.0 1.0 HB2 A:CYS291 3.2 0.0 1.0 CB A:CYS288 3.3 0.0 1.0 CB A:CYS291 3.4 0.0 1.0 H A:CYS291 3.4 0.0 1.0 H A:CYS288 3.4 0.0 1.0 HE1 A:HIS257 3.5 0.0 1.0 H4' B:C38390 3.6 0.0 1.0 HB2 A:SER290 3.7 0.0 1.0 CD2 A:HIS257 3.8 0.0 1.0 H A:LEU260 3.8 0.0 1.0 H5'1 B:C38390 3.8 0.0 1.0 CB A:LEU260 3.8 0.0 1.0 N A:CYS291 3.8 0.0 1.0 HD12 A:LEU260 3.9 0.0 1.0 HD11 A:LEU260 4.0 0.0 1.0 NE2 A:HIS257 4.0 0.0 1.0 CA A:CYS291 4.0 0.0 1.0 HB2 A:GLU259 4.1 0.0 1.0 HB2 A:CYS288 4.1 0.0 1.0 HA A:CYS291 4.1 0.0 1.0 N A:CYS288 4.2 0.0 1.0 HB3 A:LEU260 4.2 0.0 1.0 HB3 A:CYS291 4.3 0.0 1.0 H5'2 B:C38390 4.3 0.0 1.0 CA A:CYS288 4.3 0.0 1.0 CD1 A:LEU260 4.4 0.0 1.0 C5' B:C38390 4.4 0.0 1.0 N A:LEU260 4.4 0.0 1.0 HD23 A:LEU260 4.4 0.0 1.0 CA A:HIS257 4.4 0.0 1.0 C4' B:C38390 4.5 0.0 1.0 H2'' B:DU389 4.6 0.0 1.0 CA A:LEU260 4.6 0.0 1.0 O A:CYS288 4.7 0.0 1.0 CG A:LEU260 4.7 0.0 1.0 HD2 A:HIS257 4.7 0.0 1.0 C A:CYS288 4.7 0.0 1.0 CB A:SER290 4.8 0.0 1.0 C A:SER290 4.8 0.0 1.0 HA A:LEU260 4.8 0.0 1.0 HA A:HIS257 4.8 0.0 1.0 HE2 A:HIS257 4.9 0.0 1.0

X.Yan, W.Lan, C.Wang, C.Cao. Structural Investigations on the Interactions Between Cytidine Deaminase Human APOBEC3G and Dna. Chem Asian J V. 14 2235 2019.
ISSN: ESSN 1861-471X
PubMed: 31116511
DOI: 10.1002/ASIA.201900480