Zinc in PDB 6k0b: Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna

All present enzymatic activity of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna:
3.1.26.5;

The binding sites of Zinc atom in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna (pdb code 6k0b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna, PDB code: 6k0b:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:0.5 occ:1.00 SG G:CYS92 2.5 0.1 1.0 SG G:CYS95 2.6 0.7 1.0 SG G:CYS66 2.6 0.5 1.0 N G:CYS95 2.8 0.7 1.0 CB G:CYS95 3.0 0.7 1.0 CB G:GLU94 3.2 0.1 1.0 CA G:CYS95 3.4 0.7 1.0 CB G:CYS66 3.5 0.5 1.0 C G:GLU94 3.7 0.1 1.0 CA G:GLU94 3.9 0.1 1.0 CB G:CYS92 4.0 0.1 1.0 N G:GLU94 4.2 0.1 1.0 CG G:GLU94 4.3 0.1 1.0 OG1 G:THR68 4.4 0.8 1.0 N G:GLY96 4.4 0.2 1.0 C G:CYS95 4.5 0.7 1.0 SG G:CYS63 4.7 0.1 1.0 CB G:THR68 4.7 0.8 1.0 O G:GLU94 4.7 0.1 1.0 CA G:CYS66 4.8 0.5 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn201 b:0.3 occ:1.00 SG H:CYS92 2.5 0.5 1.0 SG H:CYS95 2.6 0.8 1.0 SG H:CYS66 2.6 0.0 1.0 N H:CYS95 2.8 0.8 1.0 CB H:CYS95 3.0 0.8 1.0 CB H:GLU94 3.2 0.4 1.0 CA H:CYS95 3.4 0.8 1.0 CB H:CYS66 3.5 0.0 1.0 C H:GLU94 3.7 0.4 1.0 CA H:GLU94 3.9 0.4 1.0 CB H:CYS92 4.0 0.5 1.0 N H:GLU94 4.2 0.4 1.0 CG H:GLU94 4.3 0.4 1.0 OG1 H:THR68 4.4 0.9 1.0 N H:GLY96 4.4 1.0 1.0 C H:CYS95 4.5 0.8 1.0 SG H:CYS63 4.7 0.8 1.0 CB H:THR68 4.7 0.9 1.0 O H:GLU94 4.7 0.4 1.0 CA H:CYS66 4.8 0.0 1.0

F.Wan, Q.Wang, J.Tan, M.Tan, J.Chen, S.Shi, P.Lan, J.Wu, M.Lei. Cryo-Electron Microscopy Structure of An Archaeal Ribonuclease P Holoenzyme. Nat Commun V. 10 2617 2019.
ISSN: ESSN 2041-1723
PubMed: 31197137
DOI: 10.1038/S41467-019-10496-3