Zinc in PDB 6jtl: Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion

All present enzymatic activity of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion:
3.2.1.52;

The structure of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion, PDB code: 6jtl was solved by Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.805, 90.992, 103.325, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 24.9

The binding sites of Zinc atom in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion (pdb code 6jtl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion, PDB code: 6jtl:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:65.6 occ:1.00 NE2 A:HIS175 2.2 34.0 1.0 O A:HOH573 2.3 34.5 1.0 O A:HOH633 2.7 53.6 1.0 CD2 A:HIS175 3.0 33.3 1.0 CE1 A:HIS175 3.3 31.9 1.0 NH2 A:ARG144 4.1 34.2 1.0 O B:ASP185 4.2 76.3 1.0 CG A:HIS175 4.2 32.8 1.0 ND1 A:HIS175 4.3 33.3 1.0 CD A:LYS174 4.8 36.6 1.0 OD1 A:ASP258 4.9 0.5 1.0 CE A:LYS174 4.9 35.4 1.0 NH1 A:ARG144 4.9 35.7 1.0 NZ A:LYS174 4.9 36.2 1.0 CZ A:ARG144 5.0 35.7 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:60.3 occ:1.00 NE2 A:HIS179 2.3 26.3 1.0 O A:HOH651 3.2 31.4 1.0 CE1 A:HIS179 3.2 26.8 1.0 CD2 A:HIS179 3.4 27.1 1.0 O A:HOH633 3.8 53.6 1.0 O A:HIS223 4.1 58.8 1.0 CB A:HIS223 4.2 68.8 1.0 ND1 A:HIS179 4.4 27.2 1.0 CG A:HIS179 4.5 27.4 1.0 O B:SER186 4.6 81.9 1.0 CG1 A:VAL140 4.7 38.7 1.0 C A:HIS223 4.8 55.0 1.0 N A:HIS223 4.9 53.9 1.0 CA A:HIS223 4.9 59.2 1.0 CG A:HIS223 4.9 83.4 1.0 ND1 A:HIS223 5.0 88.0 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:54.3 occ:1.00 O B:HOH566 2.2 44.7 1.0 NE2 B:HIS175 2.3 31.2 1.0 O B:HOH561 2.3 34.0 1.0 O B:HOH568 2.6 41.0 1.0 CD2 B:HIS175 3.2 32.4 1.0 CE1 B:HIS175 3.3 31.6 1.0 NH2 B:ARG144 3.7 41.1 1.0 CG B:HIS175 4.4 34.8 1.0 ND1 B:HIS175 4.4 33.4 1.0 O A:HOH593 4.6 43.6 1.0 NH1 B:ARG144 4.7 46.7 1.0 CZ B:ARG144 4.7 41.0 1.0 CD B:LYS174 4.7 39.8 1.0 C A:ASP185 4.8 57.1 1.0 CE B:LYS174 4.8 39.5 1.0 NZ B:LYS174 4.8 38.0 1.0 O B:HOH531 4.9 43.2 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Nagz From Neisseria Gonorrhoeae in Complex with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:0.9 occ:1.00 NE2 B:HIS179 2.4 43.3 1.0 O B:HOH531 3.1 43.2 1.0 CD2 B:HIS179 3.3 44.1 1.0 CE1 B:HIS179 3.4 44.7 1.0 O B:HOH584 3.5 46.2 1.0 CB B:HIS223 3.9 54.8 1.0 O B:HIS223 4.1 48.8 1.0 ND1 B:HIS179 4.5 44.0 1.0 CG B:HIS179 4.5 43.2 1.0 N B:HIS223 4.6 50.1 1.0 CD2 B:HIS223 4.6 65.4 1.0 CA B:HIS223 4.7 51.6 1.0 CG B:HIS223 4.7 59.7 1.0 O B:HOH568 4.7 41.0 1.0 C B:HIS223 4.7 50.0 1.0

Y.Chen, Y.Chen. N/A N/A.