Zinc in PDB 6jf7: K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf7 was solved by K.H.Jung, T.H.Ho, I.H.Lee, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.513, 71.259, 110.974, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.8

The structure of K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii also contains other interesting chemical elements:

Fluorine

(F)

6 atoms

The binding sites of Zinc atom in the K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jf7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:20.1 occ:1.00 F1 A:K3U202 1.9 29.6 1.0 NE2 A:HIS149 2.1 17.4 1.0 NE2 A:HIS145 2.1 16.0 1.0 SG A:CYS103 2.2 20.3 1.0 F A:K3U202 2.8 33.2 1.0 C12 A:K3U202 2.9 33.8 1.0 CE1 A:HIS149 2.9 17.1 1.0 CD2 A:HIS145 3.0 15.5 1.0 CE1 A:HIS145 3.1 19.2 1.0 CB A:CYS103 3.1 21.1 1.0 O A:HOH311 3.1 20.9 1.0 CD2 A:HIS149 3.1 16.0 1.0 NE2 A:GLN55 3.3 18.0 1.0 F2 A:K3U202 3.6 64.3 1.0 CA A:CYS103 3.6 20.3 1.0 CD A:GLN55 4.0 17.5 1.0 ND1 A:HIS149 4.1 17.9 1.0 C11 A:K3U202 4.1 35.6 1.0 OE1 A:GLN55 4.1 18.3 1.0 CG A:HIS145 4.2 16.0 1.0 ND1 A:HIS145 4.2 17.1 1.0 CG A:HIS149 4.2 15.3 1.0 N A:LEU104 4.3 20.6 1.0 C A:CYS103 4.4 21.0 1.0 O A:HOH305 4.4 17.2 1.0 C3 A:K3U202 4.5 33.2 1.0 O A:GLY102 4.6 21.7 1.0 N A:CYS103 4.9 20.9 1.0 OE2 A:GLU146 4.9 21.0 1.0 N A:SER105 4.9 20.2 1.0 OE1 A:GLU146 4.9 16.7 1.0

Zinc binding site 2 out of 2 in the K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:20.7 occ:1.00 F2 B:K3U202 1.9 28.6 1.0 NE2 B:HIS145 2.1 21.1 1.0 NE2 B:HIS149 2.1 15.5 1.0 SG B:CYS103 2.3 25.6 1.0 C12 B:K3U202 2.7 36.2 1.0 F B:K3U202 2.8 28.4 1.0 CD2 B:HIS145 3.0 19.5 1.0 CD2 B:HIS149 3.1 16.5 1.0 CE1 B:HIS145 3.1 21.2 1.0 CE1 B:HIS149 3.1 16.0 1.0 O B:HOH315 3.2 24.0 1.0 CB B:CYS103 3.3 27.5 1.0 NE2 B:GLN55 3.4 17.5 1.0 F1 B:K3U202 3.6 62.8 1.0 CA B:CYS103 3.7 27.2 1.0 C11 B:K3U202 4.0 36.5 1.0 CD B:GLN55 4.0 17.6 1.0 CG B:HIS145 4.2 18.6 1.0 ND1 B:HIS145 4.2 19.1 1.0 ND1 B:HIS149 4.2 15.4 1.0 CG B:HIS149 4.2 15.8 1.0 OE1 B:GLN55 4.3 19.4 1.0 N B:LEU104 4.4 25.8 1.0 C3 B:K3U202 4.4 38.2 1.0 O B:HOH311 4.5 16.6 1.0 C B:CYS103 4.5 28.7 1.0 O B:GLY102 4.5 25.3 1.0 N B:SER105 4.8 24.4 1.0 OE2 B:GLU146 4.9 19.8 1.0 N B:CYS103 4.9 28.6 1.0 OE1 B:GLU146 5.0 20.3 1.0

K.H.Jung, T.H.Ho, I.H.Lee, L.W.Kang. K3U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii To Be Published.