Zinc in PDB 6jf4: K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf4 was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.92 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.967, 77.351, 96.582, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 22.5

The binding sites of Zinc atom in the K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jf4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:19.7 occ:1.00 O2 B:K1U202 2.0 25.7 1.0 NE2 B:HIS145 2.0 18.6 1.0 NE2 B:HIS149 2.1 14.5 1.0 SG B:CYS103 2.3 20.5 1.0 C8 B:K1U202 2.7 25.6 1.0 O1 B:K1U202 2.9 27.3 1.0 CD2 B:HIS145 3.0 19.1 1.0 CE1 B:HIS145 3.0 19.4 1.0 CD2 B:HIS149 3.1 14.3 1.0 CE1 B:HIS149 3.1 14.7 1.0 CB B:CYS103 3.3 21.9 1.0 O B:HOH320 3.4 20.8 1.0 NE2 B:GLN55 3.6 15.3 1.0 CA B:CYS103 3.7 22.0 1.0 CD B:GLN55 4.1 16.9 1.0 C24 B:K1U202 4.1 34.4 1.0 ND1 B:HIS145 4.1 18.3 1.0 CG B:HIS145 4.1 17.2 1.0 ND1 B:HIS149 4.2 14.1 1.0 CG B:HIS149 4.2 14.0 1.0 OE1 B:GLN55 4.2 16.5 1.0 N B:LEU104 4.3 20.7 1.0 O B:HOH313 4.4 16.7 1.0 C B:CYS103 4.4 21.0 1.0 O B:GLY102 4.6 20.0 1.0 C9 B:K1U202 4.6 38.6 1.0 OE2 B:GLU146 4.7 21.6 1.0 OE1 B:GLU146 4.8 18.7 1.0 C1 B:K1U202 4.9 36.4 1.0 N B:CYS103 4.9 21.0 1.0 N B:SER105 4.9 18.3 1.0

Zinc binding site 2 out of 2 in the K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:25.9 occ:1.00 O1 A:K1U202 1.9 29.1 1.0 NE2 A:HIS149 2.1 19.4 1.0 NE2 A:HIS145 2.1 25.0 1.0 SG A:CYS103 2.3 25.7 1.0 C8 A:K1U202 2.7 30.0 1.0 O2 A:K1U202 2.9 30.0 1.0 CD2 A:HIS145 3.0 24.7 1.0 CE1 A:HIS149 3.1 19.9 1.0 CD2 A:HIS149 3.1 18.1 1.0 CE1 A:HIS145 3.2 28.2 1.0 CB A:CYS103 3.3 23.7 1.0 NE2 A:GLN55 3.3 18.6 1.0 O A:HOH312 3.5 25.8 1.0 CA A:CYS103 3.7 25.1 1.0 CD A:GLN55 3.9 18.5 1.0 OE1 A:GLN55 4.1 16.8 1.0 C24 A:K1U202 4.1 38.4 1.0 ND1 A:HIS149 4.2 19.1 1.0 CG A:HIS145 4.2 23.3 1.0 CG A:HIS149 4.2 17.6 1.0 ND1 A:HIS145 4.2 24.5 1.0 N A:LEU104 4.2 26.3 1.0 C A:CYS103 4.4 25.2 1.0 O A:HOH310 4.4 30.7 1.0 C9 A:K1U202 4.6 43.6 1.0 O A:GLY102 4.7 27.4 1.0 OE1 A:GLU146 4.9 20.1 1.0 N A:SER105 4.9 24.3 1.0 N A:CYS103 4.9 24.5 1.0 CG A:GLN55 5.0 16.1 1.0 OE2 A:GLU146 5.0 22.3 1.0

I.H.Lee, T.H.Ho, L.W.Kang. K1U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii To Be Published.