Zinc in PDB 6jf3: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf3 was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.01
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.728, 70.786, 110.859, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 26.2

The binding sites of Zinc atom in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jf3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:41.6 occ:1.00 NE2 A:HIS145 2.2 36.9 1.0 O4 A:BB2202 2.2 45.6 1.0 NE2 A:HIS149 2.2 35.1 1.0 SG A:CYS103 2.4 43.3 1.0 O2 A:BB2202 2.5 48.9 1.0 C3 A:BB2202 2.8 49.5 1.0 N1 A:BB2202 3.0 49.8 1.0 CD2 A:HIS145 3.1 34.0 1.0 CD2 A:HIS149 3.1 34.5 1.0 CE1 A:HIS145 3.2 39.7 1.0 CE1 A:HIS149 3.2 33.2 1.0 NE2 A:GLN55 3.3 25.4 1.0 CB A:CYS103 3.3 47.2 1.0 O A:HOH311 3.4 36.6 1.0 CA A:CYS103 3.8 42.9 1.0 CD A:GLN55 4.0 28.2 1.0 OE1 A:GLN55 4.2 26.4 1.0 C5 A:BB2202 4.2 50.7 1.0 CG A:HIS145 4.3 31.6 1.0 ND1 A:HIS145 4.3 35.4 1.0 CG A:HIS149 4.3 29.5 1.0 ND1 A:HIS149 4.3 30.2 1.0 N A:LEU104 4.3 52.5 1.0 C6 A:BB2202 4.4 52.5 1.0 O A:HOH309 4.5 42.0 1.0 C A:CYS103 4.5 49.7 1.0 C7 A:BB2202 4.8 49.8 1.0 OE1 A:GLU146 4.8 31.1 1.0 OE2 A:GLU146 4.9 31.0 1.0 O A:GLY102 4.9 46.2 1.0 N A:CYS103 5.0 47.1 1.0

Zinc binding site 2 out of 2 in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:31.8 occ:1.00 NE2 B:HIS145 2.2 27.3 1.0 NE2 B:HIS149 2.2 25.9 1.0 O2 B:BB2202 2.3 34.4 1.0 O4 B:BB2202 2.3 33.5 1.0 SG B:CYS103 2.3 31.1 1.0 C3 B:BB2202 2.9 36.1 1.0 N1 B:BB2202 3.0 33.1 1.0 CD2 B:HIS145 3.0 28.5 1.0 CE1 B:HIS149 3.1 28.6 1.0 CD2 B:HIS149 3.2 25.4 1.0 NE2 B:GLN55 3.2 23.5 1.0 CE1 B:HIS145 3.2 28.5 1.0 CB B:CYS103 3.3 31.2 1.0 O B:HOH312 3.4 27.1 1.0 CD B:GLN55 3.8 28.3 1.0 CA B:CYS103 3.9 31.6 1.0 OE1 B:GLN55 4.1 27.6 1.0 CG B:HIS145 4.2 26.7 1.0 ND1 B:HIS149 4.2 27.1 1.0 ND1 B:HIS145 4.3 29.2 1.0 CG B:HIS149 4.3 24.0 1.0 C5 B:BB2202 4.3 36.8 1.0 N B:LEU104 4.5 35.1 1.0 OE1 B:GLU146 4.5 35.0 1.0 O B:HOH309 4.6 26.8 1.0 C B:CYS103 4.6 32.6 1.0 C6 B:BB2202 4.6 37.8 1.0 OE2 B:GLU146 4.8 42.1 1.0 C7 B:BB2202 4.9 38.9 1.0 CG B:GLN55 4.9 25.0 1.0 O B:GLY102 5.0 41.1 1.0

I.H.Lee, T.H.Ho, L.W.Kang. Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii To Be Published.