Zinc in PDB 6jex: K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii

All present enzymatic activity of K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii:
3.5.1.88;

The structure of K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jex was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	40.176, 40.176, 187.645, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 27.2

The binding sites of Zinc atom in the K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii (pdb code 6jex). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jex:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:28.1 occ:1.00 NE2 A:HIS134 2.0 25.8 1.0 NE2 A:HIS138 2.1 23.6 1.0 SG A:CYS92 2.2 29.7 1.0 CD2 A:HIS134 2.9 25.9 1.0 CD2 A:HIS138 3.0 22.0 1.0 CE1 A:HIS134 3.1 32.0 1.0 CE1 A:HIS138 3.1 22.6 1.0 CB A:CYS92 3.4 27.2 1.0 O A:HOH325 3.5 27.8 1.0 NE2 A:GLN51 3.8 26.0 1.0 OE1 A:GLN51 3.9 24.7 1.0 CA A:CYS92 3.9 27.2 1.0 CD A:GLN51 4.0 25.2 1.0 OE2 A:GLU135 4.0 28.5 1.0 CG A:HIS134 4.1 28.2 1.0 ND1 A:HIS134 4.2 28.2 1.0 CG A:HIS138 4.2 24.2 1.0 ND1 A:HIS138 4.2 24.2 1.0 O A:HOH329 4.3 23.3 1.0 OE1 A:GLU135 4.4 25.9 1.0 CD A:GLU135 4.5 25.8 1.0 O A:GLY91 4.6 28.0 1.0 N A:LEU93 4.7 27.1 1.0 C A:CYS92 4.7 28.0 1.0

Zinc binding site 2 out of 2 in the K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:27.8 occ:1.00 O2 B:LHY202 1.8 30.2 1.0 NE2 B:HIS138 2.0 19.7 1.0 NE2 B:HIS134 2.1 26.0 1.0 SG B:CYS92 2.3 27.0 1.0 N2 B:LHY202 3.0 54.0 1.0 CD2 B:HIS134 3.0 26.8 1.0 CD2 B:HIS138 3.0 21.6 1.0 CE1 B:HIS138 3.1 19.7 1.0 CE1 B:HIS134 3.1 33.7 1.0 O B:HOH339 3.4 26.9 1.0 CB B:CYS92 3.4 25.8 1.0 O1 B:LHY202 3.5 51.7 1.0 C1 B:LHY202 3.6 50.2 1.0 NE2 B:GLN51 3.7 24.6 1.0 OE1 B:GLN51 3.9 25.1 1.0 CD B:GLN51 3.9 24.8 1.0 CA B:CYS92 4.0 25.6 1.0 OE2 B:GLU135 4.1 30.8 1.0 CG B:HIS134 4.1 29.1 1.0 CG B:HIS138 4.2 22.3 1.0 ND1 B:HIS138 4.2 21.2 1.0 ND1 B:HIS134 4.2 29.5 1.0 O B:HOH327 4.3 23.6 1.0 OE1 B:GLU135 4.6 28.0 1.0 CD B:GLU135 4.6 27.5 1.0 O B:GLY91 4.6 29.3 1.0 N B:LHY202 4.7 67.1 1.0 CB B:LHY202 4.7 58.7 1.0 N B:LEU93 4.7 26.8 1.0 C B:CYS92 4.8 28.4 1.0 CA B:LHY202 4.9 63.6 1.0

I.H.Lee, T.H.Ho, L.W.Kang. K4U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii To Be Published.