Zinc in PDB 6jev: K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii

All present enzymatic activity of K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii:
3.5.1.88;

The structure of K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jev was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.58 / 1.90
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	40.062, 40.062, 188.271, 90.00, 90.00, 120.00
R / Rfree (%)	19.9 / 25.6

The binding sites of Zinc atom in the K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii (pdb code 6jev). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jev:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:19.1 occ:1.00 O21 A:K2U202 2.0 27.2 1.0 NE2 A:HIS138 2.0 15.5 1.0 NE2 A:HIS134 2.1 17.9 1.0 SG A:CYS92 2.3 18.3 1.0 C1 A:K2U202 2.8 44.2 1.0 CD2 A:HIS134 3.0 19.6 1.0 CD2 A:HIS138 3.0 14.8 1.0 CE1 A:HIS138 3.1 16.6 1.0 CE1 A:HIS134 3.1 22.4 1.0 CB A:CYS92 3.3 20.0 1.0 O22 A:K2U202 3.5 32.7 1.0 O A:HOH310 3.5 20.1 1.0 NE2 A:GLN51 3.8 17.9 1.0 CA A:CYS92 3.9 19.1 1.0 OE1 A:GLN51 3.9 16.1 1.0 C2 A:K2U202 4.0 55.1 1.0 CD A:GLN51 4.0 17.8 1.0 OE2 A:GLU135 4.1 21.6 1.0 CG A:HIS134 4.1 17.9 1.0 CG A:HIS138 4.1 15.6 1.0 ND1 A:HIS138 4.2 17.1 1.0 ND1 A:HIS134 4.2 19.3 1.0 O A:HOH309 4.4 16.2 1.0 C3 A:K2U202 4.4 57.3 1.0 OE1 A:GLU135 4.5 20.3 1.0 CD A:GLU135 4.6 19.6 1.0 N A:LEU93 4.6 19.7 1.0 O A:GLY91 4.6 21.2 1.0 C A:CYS92 4.6 19.6 1.0 C4 A:K2U202 4.8 54.6 1.0

Zinc binding site 2 out of 2 in the K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K2U Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:19.4 occ:1.00 O21 B:K2U202 2.1 31.3 1.0 NE2 B:HIS134 2.1 19.2 1.0 NE2 B:HIS138 2.1 17.3 1.0 SG B:CYS92 2.3 18.8 1.0 C1 B:K2U202 3.0 41.2 1.0 CD2 B:HIS134 3.0 20.2 1.0 CD2 B:HIS138 3.1 15.4 1.0 CE1 B:HIS138 3.1 16.1 1.0 CE1 B:HIS134 3.1 23.5 1.0 CB B:CYS92 3.3 19.1 1.0 O B:HOH310 3.4 21.1 1.0 O22 B:K2U202 3.6 33.8 1.0 NE2 B:GLN51 3.8 16.4 1.0 CA B:CYS92 3.9 18.8 1.0 OE1 B:GLN51 3.9 15.8 1.0 CD B:GLN51 4.0 17.8 1.0 OE2 B:GLU135 4.1 22.2 1.0 C2 B:K2U202 4.1 52.8 1.0 CG B:HIS134 4.2 18.7 1.0 ND1 B:HIS134 4.2 19.9 1.0 ND1 B:HIS138 4.2 17.7 1.0 CG B:HIS138 4.2 16.2 1.0 O B:HOH308 4.4 18.0 1.0 OE1 B:GLU135 4.5 21.2 1.0 C3 B:K2U202 4.6 55.6 1.0 CD B:GLU135 4.6 19.7 1.0 N B:LEU93 4.6 20.2 1.0 C B:CYS92 4.7 20.5 1.0 O B:GLY91 4.7 20.6 1.0 C4 B:K2U202 4.7 51.9 1.0

I.H.Lee, T.H.Ho, L.W.Kang. K2U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii To Be Published.