Zinc in PDB 6jeu: K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii

All present enzymatic activity of K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii:
3.5.1.88;

The structure of K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jeu was solved by T.H.Ho, I.H.Lee, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.10
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	39.852, 39.852, 187.692, 90.00, 90.00, 120.00
R / Rfree (%)	21.5 / 28

The binding sites of Zinc atom in the K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii (pdb code 6jeu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jeu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:32.0 occ:1.00 O2 A:K1U202 1.9 42.0 1.0 NE2 A:HIS138 2.0 26.9 1.0 NE2 A:HIS134 2.0 27.9 1.0 SG A:CYS92 2.3 32.0 1.0 C8 A:K1U202 2.9 53.1 1.0 CD2 A:HIS134 2.9 27.3 1.0 CE1 A:HIS138 2.9 25.1 1.0 CD2 A:HIS138 3.0 25.5 1.0 CE1 A:HIS134 3.1 31.4 1.0 O A:HOH307 3.3 34.2 1.0 CB A:CYS92 3.3 31.1 1.0 O1 A:K1U202 3.6 36.5 1.0 NE2 A:GLN51 3.7 28.7 1.0 CA A:CYS92 3.9 29.0 1.0 OE1 A:GLN51 3.9 23.7 1.0 CD A:GLN51 4.0 29.6 1.0 OE2 A:GLU135 4.0 35.4 1.0 C24 A:K1U202 4.0 62.5 1.0 ND1 A:HIS138 4.1 27.3 1.0 CG A:HIS134 4.1 28.9 1.0 ND1 A:HIS134 4.1 30.6 1.0 CG A:HIS138 4.2 25.1 1.0 O A:HOH304 4.4 25.4 1.0 OE1 A:GLU135 4.6 35.3 1.0 O A:GLY91 4.6 35.7 1.0 C9 A:K1U202 4.6 60.9 1.0 CD A:GLU135 4.6 31.2 1.0 N A:LEU93 4.6 29.5 1.0 C A:CYS92 4.7 31.3 1.0

Zinc binding site 2 out of 2 in the K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:32.2 occ:1.00 O2 B:K1U202 1.9 37.6 1.0 NE2 B:HIS138 2.0 27.1 1.0 NE2 B:HIS134 2.0 29.5 1.0 SG B:CYS92 2.3 32.2 1.0 CD2 B:HIS134 2.9 27.7 1.0 CE1 B:HIS138 2.9 24.8 1.0 C8 B:K1U202 3.0 52.3 1.0 CD2 B:HIS138 3.0 25.4 1.0 CE1 B:HIS134 3.1 32.9 1.0 O B:HOH305 3.2 34.1 1.0 CB B:CYS92 3.3 31.2 1.0 O1 B:K1U202 3.6 35.3 1.0 NE2 B:GLN51 3.7 28.6 1.0 CA B:CYS92 3.9 30.3 1.0 OE1 B:GLN51 3.9 24.9 1.0 CD B:GLN51 4.0 29.9 1.0 OE2 B:GLU135 4.0 35.9 1.0 ND1 B:HIS138 4.1 27.6 1.0 CG B:HIS134 4.1 30.0 1.0 CG B:HIS138 4.1 23.9 1.0 ND1 B:HIS134 4.2 31.3 1.0 C24 B:K1U202 4.2 63.9 1.0 O B:HOH302 4.4 26.0 1.0 OE1 B:GLU135 4.6 35.3 1.0 O B:GLY91 4.6 36.0 1.0 C9 B:K1U202 4.6 60.7 1.0 CD B:GLU135 4.6 32.2 1.0 N B:LEU93 4.6 29.7 1.0 C1 B:K1U202 4.6 61.6 1.0 C B:CYS92 4.7 31.4 1.0

T.H.Ho, I.H.Lee, L.W.Kang. K1U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii To Be Published.