Zinc in PDB 6jet: Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jet was solved by T.H.Ho, I.H.Lee, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.666, 112.903, 43.678, 90.00, 102.85, 90.00
R / Rfree (%)	24.7 / 29.5

The binding sites of Zinc atom in the Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jet). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jet:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:28.3 occ:1.00 O2 A:BB2202 1.9 35.1 1.0 NE2 A:HIS138 2.0 23.0 1.0 NE2 A:HIS134 2.3 19.9 1.0 SG A:CYS92 2.3 24.9 1.0 O4 A:BB2202 2.5 33.4 1.0 CE1 A:HIS138 2.8 24.4 1.0 N1 A:BB2202 2.8 32.0 1.0 O A:HOH318 3.0 22.2 1.0 C3 A:BB2202 3.0 34.3 1.0 CD2 A:HIS138 3.1 24.1 1.0 CD2 A:HIS134 3.2 20.4 1.0 CB A:CYS92 3.3 26.9 1.0 CE1 A:HIS134 3.3 21.3 1.0 NE2 A:GLN51 3.6 33.9 1.0 OE1 A:GLN51 3.7 37.1 1.0 CA A:CYS92 3.8 26.5 1.0 CD A:GLN51 3.8 34.3 1.0 ND1 A:HIS138 4.0 26.2 1.0 CG A:HIS138 4.1 26.3 1.0 N A:LEU93 4.2 25.2 1.0 CG A:HIS134 4.4 21.4 1.0 C5 A:BB2202 4.4 36.5 1.0 ND1 A:HIS134 4.4 21.2 1.0 C A:CYS92 4.5 24.8 1.0 OE2 A:GLU135 4.5 30.4 1.0 OG A:SER94 4.6 24.5 1.0 C6 A:BB2202 4.7 38.5 1.0 OE1 A:GLU135 4.8 32.5 1.0 N A:SER94 4.8 25.4 1.0 O A:GLY91 4.8 30.2 1.0 CG A:GLN51 5.0 34.2 1.0

Zinc binding site 2 out of 2 in the Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:29.7 occ:1.00 O4 B:BB2202 2.0 43.1 1.0 NE2 B:HIS134 2.1 22.9 1.0 NE2 B:HIS138 2.2 24.4 1.0 O2 B:BB2202 2.3 42.0 1.0 SG B:CYS92 2.4 30.3 1.0 C3 B:BB2202 2.8 41.0 1.0 CE1 B:HIS138 2.9 24.1 1.0 N1 B:BB2202 2.9 40.6 1.0 CE1 B:HIS134 3.0 25.2 1.0 O B:HOH325 3.2 24.8 1.0 CD2 B:HIS134 3.3 23.5 1.0 CD2 B:HIS138 3.3 23.9 1.0 CB B:CYS92 3.3 28.6 1.0 NE2 B:GLN51 3.4 21.0 1.0 CD B:GLN51 3.7 20.8 1.0 OE1 B:GLN51 3.7 18.8 1.0 CA B:CYS92 3.8 27.7 1.0 ND1 B:HIS138 4.1 24.4 1.0 N B:LEU93 4.1 27.7 1.0 ND1 B:HIS134 4.1 25.2 1.0 C5 B:BB2202 4.2 39.5 1.0 CG B:HIS138 4.3 23.7 1.0 CG B:HIS134 4.3 24.5 1.0 C B:CYS92 4.4 27.6 1.0 OE2 B:GLU135 4.5 33.3 1.0 C6 B:BB2202 4.6 36.5 1.0 CG B:GLN51 4.7 23.3 1.0 N B:SER94 4.8 23.0 1.0 O B:HOH318 4.8 12.0 1.0 O B:GLY91 4.8 30.4 1.0 OG B:SER94 4.9 20.3 1.0

T.H.Ho, I.H.Lee, L.W.Kang. Actinonin Bound Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii To Be Published.