Zinc in PDB 6j9e: Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7

All present enzymatic activity of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7:
2.7.7.6;

The structure of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7 (pdb code 6j9e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7, PDB code: 6j9e:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:0.8 occ:1.00 SG D:CYS85 2.6 93.1 1.0 SG D:CYS72 2.7 95.7 1.0 CB D:CYS85 3.0 93.1 1.0 O D:CYS88 3.1 98.0 1.0 CB D:CYS70 3.1 82.4 1.0 CB D:CYS88 3.8 98.0 1.0 SG D:CYS70 3.9 82.4 1.0 N D:CYS88 3.9 98.0 1.0 C D:CYS88 4.0 98.0 1.0 N D:CYS72 4.0 95.7 1.0 N D:LEU71 4.1 83.3 1.0 CA D:CYS88 4.1 98.0 1.0 CB D:CYS72 4.2 95.7 1.0 CA D:CYS70 4.3 82.4 1.0 CA D:CYS85 4.4 93.1 1.0 CG2 D:THR90 4.6 73.0 1.0 C D:CYS70 4.6 82.4 1.0 CA D:CYS72 4.7 95.7 1.0 N D:GLY73 4.9 90.7 1.0 SG D:CYS88 4.9 98.0 1.0 C D:CYS85 4.9 93.1 1.0 CA D:LEU71 5.0 83.3 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with Nusa and the Bacteriophage Protein P7 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1503 b:64.3 occ:1.00 SG D:CYS900 2.5 45.5 1.0 SG D:CYS890 2.5 62.9 1.0 SG D:CYS815 2.5 55.1 1.0 CB D:CYS897 2.6 45.5 1.0 CB D:CYS815 3.3 55.1 1.0 CB D:CYS900 3.6 45.5 1.0 CB D:CYS890 3.7 62.9 1.0 SG D:CYS897 3.7 45.5 1.0 CA D:CYS897 3.8 45.5 1.0 N D:CYS897 3.8 45.5 1.0 NH2 D:ARG885 4.0 44.5 1.0 CA D:CYS890 4.1 62.9 1.0 N D:GLU891 4.4 64.9 1.0 OG1 D:THR817 4.4 62.9 1.0 CA D:CYS815 4.7 55.1 1.0 N D:CYS900 4.8 45.5 1.0 C D:CYS897 4.8 45.5 1.0 C D:CYS890 4.8 62.9 1.0 CA D:CYS900 4.8 45.5 1.0 N D:CYS815 4.9 55.1 1.0 CB D:THR817 4.9 62.9 1.0

L.You, J.Shi, L.Shen, L.Li, C.Fang, C.Yu, W.Cheng, Y.Feng, Y.Zhang. Structural Basis For Transcription Antitermination at Bacterial Intrinsic Terminator. Nat Commun V. 10 3048 2019.
ISSN: ESSN 2041-1723
PubMed: 31296855
DOI: 10.1038/S41467-019-10955-X