Zinc in PDB 6j2u: Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion

Protein crystallography data

The structure of Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion, PDB code: 6j2u was solved by S.-H.Lee, H.Hong, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.12 / 1.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.998, 71.828, 48.524, 90.00, 113.72, 90.00
R / Rfree (%) 15.5 / 17.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion (pdb code 6j2u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion, PDB code: 6j2u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6j2u

Go back to Zinc Binding Sites List in 6j2u
Zinc binding site 1 out of 2 in the Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:9.2
occ:1.00
NE2 B:HIS216 2.0 6.7 1.0
NE2 B:HIS190 2.0 6.3 1.0
NE2 B:HIS194 2.0 7.5 1.0
O A:HOH263 2.2 4.6 1.0
CE1 B:HIS216 2.9 7.7 1.0
CE1 B:HIS190 3.0 7.2 1.0
CE1 B:HIS194 3.0 7.0 1.0
CD2 B:HIS190 3.1 6.1 1.0
CD2 B:HIS194 3.1 6.8 1.0
CD2 B:HIS216 3.1 6.7 1.0
CE2 B:PHE212 3.9 7.4 1.0
OH A:TYR92 4.1 13.8 1.0
ND1 B:HIS216 4.1 7.2 1.0
ND1 B:HIS194 4.1 7.2 1.0
ND1 B:HIS190 4.1 6.7 1.0
CG B:HIS190 4.2 5.8 1.0
CG B:HIS194 4.2 6.7 1.0
CG B:HIS216 4.2 6.3 1.0
CE1 A:TYR92 4.3 11.5 1.0
ZN B:ZN302 4.3 32.4 1.0
CZ A:TYR92 4.5 11.3 1.0
CZ B:PHE212 4.5 7.5 1.0
CD2 B:HIS215 4.6 6.9 1.0
CD2 B:PHE212 4.6 7.0 1.0
NE2 B:HIS63 4.7 9.1 1.0
NE2 B:HIS215 4.8 7.1 1.0
CE1 B:PHE59 4.9 7.4 1.0

Zinc binding site 2 out of 2 in 6j2u

Go back to Zinc Binding Sites List in 6j2u
Zinc binding site 2 out of 2 in the Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn302

b:32.4
occ:1.00
NE2 B:HIS38 1.7 12.6 1.0
NE2 B:HIS54 2.0 13.9 1.0
NE2 B:HIS63 2.1 9.1 1.0
O A:HOH263 2.6 4.6 1.0
CE1 B:HIS38 2.6 13.2 1.0
CE1 B:HIS63 2.6 8.5 1.0
CD2 B:HIS38 2.8 14.0 1.0
CD2 B:HIS54 3.0 15.4 1.0
CE1 B:HIS54 3.1 16.9 1.0
CD2 B:HIS63 3.4 7.2 1.0
ND1 B:HIS38 3.7 12.5 1.0
CG B:HIS38 3.8 12.5 1.0
ND1 B:HIS63 3.9 8.1 1.0
CG B:HIS54 4.1 13.8 1.0
ND1 B:HIS54 4.1 14.4 1.0
CZ B:PHE212 4.2 7.5 1.0
CG B:HIS63 4.3 7.4 1.0
ZN B:ZN301 4.3 9.2 1.0
CE2 B:PHE212 4.5 7.4 1.0
NE2 B:HIS216 4.6 6.7 1.0
CZ3 B:TRP62 4.6 8.8 1.0
CD1 B:ILE42 4.6 20.0 1.0
O B:GLY53 4.7 9.1 1.0
CE1 B:HIS216 4.7 7.7 1.0
OH A:TYR92 4.9 13.8 1.0
CG1 B:ILE42 4.9 17.7 1.0

Reference:

S.-H.Lee, H.Hong, K.-J.Kim. Crystal Structure of Tyrosinase Caddy Protein(MELC1)with Tyrosinase (MELC2)From Streptomyces Avermitilis in Complex with Zinc Ion To Be Published.
Page generated: Wed Dec 16 12:02:35 2020

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