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Zinc in PDB 6ig7: Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser

Enzymatic activity of Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser

All present enzymatic activity of Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser:
3.4.24.27;

Protein crystallography data

The structure of Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser, PDB code: 6ig7 was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.12 / 1.80
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.663, 92.663, 128.591, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 20.2

Other elements in 6ig7:

The structure of Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser (pdb code 6ig7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser, PDB code: 6ig7:

Zinc binding site 1 out of 1 in 6ig7

Go back to Zinc Binding Sites List in 6ig7
Zinc binding site 1 out of 1 in the Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Thermolysin Delivered in Polyacrylamide Using X- Ray Free Electron Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:32.2
occ:1.00
 OE1 A:GLU166 2.0 28.5 1.0
NE2 A:HIS142 2.0 29.8 1.0
NE2 A:HIS146 2.0 27.2 1.0
CD A:GLU166 2.7 29.9 1.0
OE2 A:GLU166 2.9 34.5 1.0
CE1 A:HIS142 3.0 25.9 1.0
CD2 A:HIS146 3.0 29.6 1.0
CE1 A:HIS146 3.0 31.1 1.0
CD2 A:HIS142 3.0 29.2 1.0
HE1 A:HIS142 3.2 31.1 1.0
HD2 A:HIS146 3.2 35.6 1.0
HD2 A:HIS142 3.2 35.0 1.0
HE1 A:HIS146 3.2 37.4 1.0
HA A:LEU406 3.6 37.6 1.0
HA A:GLU166 3.7 33.5 1.0
O A:HOH520 3.9 31.7 1.0
HB2 A:SER169 4.0 32.6 1.0
HD2 A:HIS231 4.0 39.8 1.0
ND1 A:HIS142 4.1 25.8 1.0
ND1 A:HIS146 4.1 25.5 1.0
CG A:HIS142 4.1 24.8 1.0
CG A:HIS146 4.2 26.2 1.0
CG A:GLU166 4.2 23.5 1.0
CA A:LEU406 4.2 31.4 1.0
N A:LEU406 4.3 27.5 1.0
O A:LEU406 4.3 30.1 1.0
NE2 A:HIS231 4.3 35.4 1.0
HB3 A:SER169 4.3 32.6 1.0
OE1 A:GLU143 4.4 26.3 1.0
HB3 A:GLU166 4.4 34.4 1.0
C A:LEU406 4.5 30.7 1.0
CD2 A:HIS231 4.5 33.2 1.0
HE2 A:TYR157 4.5 46.5 1.0
CB A:SER169 4.5 27.1 1.0
OE2 A:GLU143 4.6 35.0 1.0
CA A:GLU166 4.6 27.9 1.0
CB A:GLU166 4.6 28.7 1.0
HG2 A:GLU166 4.6 28.3 1.0
OG A:SER169 4.7 28.0 1.0
HG3 A:GLU166 4.7 28.3 1.0
HH22 A:ARG203 4.7 39.5 1.0
HD12 A:LEU406 4.8 39.9 1.0
CD A:GLU143 4.8 25.8 1.0
HD1 A:HIS142 4.9 31.0 1.0
HD1 A:HIS146 4.9 30.6 1.0
HA A:GLU143 5.0 30.3 1.0

Reference:

J.Park, S.Park, J.Kim, G.Park, Y.Cho, K.H.Nam. Polyacrylamide Injection Matrix For Serial Femtosecond Crystallography. Sci Rep V. 9 2525 2019.
ISSN: ESSN 2045-2322
PubMed: 30792457
DOI: 10.1038/S41598-019-39020-9
Page generated: Mon Oct 28 23:49:57 2024

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