Zinc in PDB 6i0y: Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel

Enzymatic activity of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel

All present enzymatic activity of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel:
2.7.11.1;

Other elements in 6i0y:

The structure of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel also contains other interesting chemical elements:

Magnesium (Mg) 143 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel (pdb code 6i0y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel, PDB code: 6i0y:

Zinc binding site 1 out of 1 in 6i0y

Go back to Zinc Binding Sites List in 6i0y
Zinc binding site 1 out of 1 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range:
probe atom residue distance (Å) B Occ
4:Zn102

b:42.2
occ:1.00
 SG 4:CYS11 1.9 28.0 1.0
ND1 4:HIS33 1.9 16.7 1.0
SG 4:CYS27 2.0 25.6 1.0
CB 4:CYS11 2.4 7.4 1.0
SG 4:CYS14 2.4 12.3 1.0
CE1 4:HIS33 2.5 12.8 1.0
CG 4:HIS33 3.1 18.1 1.0
N 4:CYS11 3.3 15.4 1.0
CA 4:CYS11 3.4 12.5 1.0
CB 4:CYS27 3.5 15.7 1.0
NE2 4:HIS33 3.6 13.1 1.0
CB 4:HIS33 3.7 16.9 1.0
CB 4:GLU30 3.8 15.9 1.0
CD2 4:HIS33 3.9 14.8 1.0
CB 4:CYS14 4.2 11.8 1.0
N 4:CYS14 4.3 18.9 1.0
C 4:CYS11 4.5 18.6 1.0
CG 4:GLU30 4.5 16.6 1.0
C 4:LEU10 4.5 11.3 1.0
O 4:GLU30 4.6 12.0 1.0
CB 4:LEU10 4.6 8.1 1.0
CA 4:CYS14 4.7 16.1 1.0
CA 4:CYS27 4.8 16.6 1.0
N 4:GLU30 4.8 22.3 1.0
CA 4:GLU30 4.8 16.5 1.0
O 4:CYS11 4.9 24.9 1.0
C 4:ASN13 5.0 29.4 1.0

Reference:

P.Tian, A.Steward, R.Kudva, T.Su, P.J.Shilling, A.A.Nickson, J.J.Hollins, R.Beckmann, G.Von Heijne, J.Clarke, R.B.Best. Folding Pathway of An Ig Domain Is Conserved on and Off the Ribosome. Proc. Natl. Acad. Sci. V. 115 11284 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30413621
DOI: 10.1073/PNAS.1810523115
Page generated: Wed Dec 16 11:59:23 2020

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