Zinc in PDB 6h11: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028, PDB code: 6h11 was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.20 / 1.52
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.928, 71.928, 151.178, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 22.2

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 also contains other interesting chemical elements:

Nickel	(Ni)	1 atom
Bromine	(Br)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Zinc atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 (pdb code 6h11). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028, PDB code: 6h11:

Zinc binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:20.3 occ:1.00 NE2 A:HIS244 2.1 16.4 1.0 SG A:CYS238 2.3 21.5 1.0 SG A:CYS310 2.3 26.0 1.0 SG A:CYS312 2.3 26.5 1.0 HB2 A:CYS238 2.8 27.1 1.0 CE1 A:HIS244 3.0 16.4 1.0 CB A:CYS238 3.1 22.6 1.0 CD2 A:HIS244 3.1 15.7 1.0 HB2 A:CYS310 3.2 30.3 1.0 HE1 A:HIS244 3.2 19.7 1.0 HB3 A:CYS312 3.2 34.8 1.0 HD2 A:HIS244 3.3 18.8 1.0 H A:CYS312 3.3 38.0 1.0 CB A:CYS310 3.3 25.2 1.0 HB3 A:CYS238 3.4 27.1 1.0 HB2 A:GLU314 3.4 57.0 1.0 CB A:CYS312 3.4 28.9 1.0 HA A:PHE241 3.9 18.2 1.0 HA A:CYS310 3.9 31.9 1.0 H A:GLU314 4.0 54.7 1.0 H A:ALA315 4.0 61.6 1.0 N A:CYS312 4.0 31.6 1.0 HB3 A:CYS310 4.1 30.3 1.0 CA A:CYS310 4.1 26.6 1.0 ND1 A:HIS244 4.1 16.2 1.0 HB2 A:CYS312 4.2 34.8 1.0 HG3 A:GLU314 4.2 56.9 1.0 CA A:CYS312 4.2 30.1 1.0 CG A:HIS244 4.2 14.8 1.0 O A:HOH675 4.2 29.6 1.0 CB A:GLU314 4.3 47.5 1.0 HG2 A:GLU314 4.3 56.9 1.0 CA A:CYS238 4.4 23.6 1.0 H A:GLY313 4.4 43.8 1.0 CG A:GLU314 4.5 47.4 1.0 HA A:CYS238 4.5 28.4 1.0 H A:SER311 4.5 37.6 0.3 H A:SER311 4.6 37.6 0.7 C A:CYS310 4.6 30.3 1.0 N A:GLU314 4.6 45.6 1.0 C A:CYS312 4.7 33.1 1.0 H A:ALA240 4.7 26.0 1.0 N A:SER311 4.7 31.3 1.0 N A:ALA315 4.7 51.4 1.0 N A:GLY313 4.7 36.5 1.0 O A:ALA240 4.7 19.5 1.0 HB2 A:ALA315 4.7 63.9 1.0 CA A:PHE241 4.8 15.2 1.0 HB3 A:ALA315 4.8 63.9 1.0 O A:HOH824 4.8 43.4 1.0 HB2 A:ARG243 4.8 16.9 1.0 HD1 A:HIS244 4.9 19.4 1.0 HB3 A:GLU314 4.9 57.0 1.0 C A:ALA240 5.0 17.1 1.0 CA A:GLU314 5.0 47.6 1.0

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 To Be Published.