Zinc in PDB 6gxa: Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
Enzymatic activity of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
All present enzymatic activity of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2:
3.5.1.98;
3.5.1.98;
Protein crystallography data
The structure of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2, PDB code: 6gxa
was solved by
T.B.Shaik,
M.Marek,
C.Romier,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 43.15 / 2.10 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 70.200, 70.441, 97.721, 75.55, 78.23, 85.82 |
| R / Rfree (%) | 17.5 / 22.6 |
Other elements in 6gxa:
The structure of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2 also contains other interesting chemical elements:
| Potassium | (K) | 8 atoms |
| Chlorine | (Cl) | 4 atoms |
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
(pdb code 6gxa). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2, PDB code: 6gxa:
Jump to Zinc binding site number: 1; 2; 3; 4;
In total 4 binding sites of Zinc where determined in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2, PDB code: 6gxa:
Jump to Zinc binding site number: 1; 2; 3; 4;
Zinc binding site 1 out of 4 in 6gxa
Go back to
Zinc Binding Sites List in 6gxa
Zinc binding site 1 out
of 4 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2 within 5.0Å range:
|
Zinc binding site 2 out of 4 in 6gxa
Go back to
Zinc Binding Sites List in 6gxa
Zinc binding site 2 out
of 4 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2 within 5.0Å range:
|
Zinc binding site 3 out of 4 in 6gxa
Go back to
Zinc Binding Sites List in 6gxa
Zinc binding site 3 out
of 4 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2 within 5.0Å range:
|
Zinc binding site 4 out of 4 in 6gxa
Go back to
Zinc Binding Sites List in 6gxa
Zinc binding site 4 out
of 4 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with An Hydroxamate 2 within 5.0Å range:
|
Reference:
T.Bayer,
A.Chakrabarti,
J.Lancelot,
T.B.Shaik,
K.Hausmann,
J.Melesina,
K.Schmidtkunz,
M.Marek,
F.Erdmann,
M.Schmidt,
D.Robaa,
C.Romier,
R.J.Pierce,
M.Jung,
W.Sippl.
Synthesis, Crystallization Studies, and in Vitro Characterization of Cinnamic Acid Derivatives As SMHDAC8 Inhibitors For the Treatment of Schistosomiasis. Chemmedchem V. 13 1517 2018.
ISSN: ESSN 1860-7187
PubMed: 29806110
DOI: 10.1002/CMDC.201800238
Page generated: Wed Dec 16 11:53:28 2020
ISSN: ESSN 1860-7187
PubMed: 29806110
DOI: 10.1002/CMDC.201800238
Last articles
Zn in 2YRCZn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
