Atomistry » Zinc » PDB 6gc8-6gml » 6gjw
Atomistry »
  Zinc »
    PDB 6gc8-6gml »
      6gjw »

Zinc in PDB 6gjw: Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog

Enzymatic activity of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog

All present enzymatic activity of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog:
2.3.2.27;

Protein crystallography data

The structure of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog, PDB code: 6gjw was solved by L.Sorrentino, F.Cossu, B.Malkoc, M.Zaffaroni, M.Milani, E.Mastrangelo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.33 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.500, 75.800, 70.000, 90.00, 90.00, 90.00
R / Rfree (%) 23.9 / 28.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog (pdb code 6gjw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog, PDB code: 6gjw:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6gjw

Go back to Zinc Binding Sites List in 6gjw
Zinc binding site 1 out of 4 in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:21.3
occ:1.00
NE2 A:HIS83 2.0 18.2 1.0
SG A:CYS90 2.2 24.2 1.0
SG A:CYS66 2.4 21.9 1.0
SG A:CYS63 2.4 24.9 1.0
CE1 A:HIS83 2.9 17.2 1.0
CB A:CYS63 3.0 23.4 1.0
CD2 A:HIS83 3.1 19.2 1.0
CB A:CYS90 3.1 25.9 1.0
CB A:CYS66 3.2 23.5 1.0
N A:CYS66 3.8 25.6 1.0
ND1 A:HIS83 4.0 15.8 1.0
CA A:CYS66 4.1 25.1 1.0
CG A:HIS83 4.2 18.8 1.0
CA A:CYS90 4.4 24.9 1.0
CA A:CYS63 4.5 21.6 1.0
CB A:SER87 4.6 20.6 1.0
CG1 A:ILE93 4.7 27.4 1.0
CB A:SER65 4.8 26.7 1.0
C A:CYS66 4.8 26.5 1.0
C A:SER65 4.8 26.1 1.0
CB A:PHE92 4.8 21.8 1.0
OG A:SER87 4.8 24.4 1.0
N A:SER65 5.0 23.0 1.0

Zinc binding site 2 out of 4 in 6gjw

Go back to Zinc Binding Sites List in 6gjw
Zinc binding site 2 out of 4 in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:22.8
occ:1.00
NE2 B:HIS83 2.1 21.5 1.0
SG B:CYS90 2.2 27.8 1.0
SG B:CYS66 2.3 20.1 1.0
SG B:CYS63 2.4 23.6 1.0
CE1 B:HIS83 3.0 21.3 1.0
CB B:CYS63 3.0 21.1 1.0
CB B:CYS90 3.1 30.3 1.0
CB B:CYS66 3.2 22.4 1.0
CD2 B:HIS83 3.2 19.9 1.0
N B:CYS66 3.6 24.4 1.0
CA B:CYS66 4.0 23.8 1.0
ND1 B:HIS83 4.2 20.0 1.0
CG B:HIS83 4.3 19.9 1.0
CA B:CYS90 4.5 31.0 1.0
CB B:SER87 4.5 25.3 1.0
CA B:CYS63 4.5 22.6 1.0
CB B:SER65 4.6 29.8 1.0
C B:SER65 4.7 27.2 1.0
OG B:SER87 4.7 21.1 1.0
C B:CYS66 4.8 26.0 1.0
N B:HIS67 4.9 26.4 1.0
N B:SER65 5.0 30.2 1.0

Zinc binding site 3 out of 4 in 6gjw

Go back to Zinc Binding Sites List in 6gjw
Zinc binding site 3 out of 4 in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:21.9
occ:1.00
NE2 C:HIS83 1.9 19.7 1.0
SG C:CYS90 2.3 24.2 1.0
SG C:CYS63 2.3 25.6 1.0
SG C:CYS66 2.4 23.6 1.0
CE1 C:HIS83 2.7 18.9 1.0
CB C:CYS63 3.0 24.0 1.0
CD2 C:HIS83 3.1 20.2 1.0
CB C:CYS66 3.1 21.7 1.0
CB C:CYS90 3.1 24.9 1.0
N C:CYS66 3.7 23.6 1.0
ND1 C:HIS83 3.9 20.1 1.0
CA C:CYS66 4.0 24.0 1.0
CG C:HIS83 4.1 21.9 1.0
CA C:CYS90 4.5 25.1 1.0
CA C:CYS63 4.5 21.9 1.0
CB C:SER87 4.6 27.1 1.0
CB C:SER65 4.7 23.2 1.0
CB C:PHE92 4.8 24.9 1.0
C C:CYS66 4.8 25.6 1.0
C C:SER65 4.8 28.6 1.0
OG C:SER87 4.8 26.2 1.0

Zinc binding site 4 out of 4 in 6gjw

Go back to Zinc Binding Sites List in 6gjw
Zinc binding site 4 out of 4 in the Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:24.1
occ:1.00
NE2 D:HIS83 2.0 16.1 1.0
SG D:CYS90 2.3 25.9 1.0
SG D:CYS63 2.3 26.9 1.0
SG D:CYS66 2.3 22.9 1.0
CE1 D:HIS83 2.8 18.3 1.0
CB D:CYS63 3.0 26.4 1.0
CB D:CYS66 3.2 26.6 1.0
CD2 D:HIS83 3.2 18.6 1.0
CB D:CYS90 3.2 33.1 1.0
N D:CYS66 3.7 24.9 1.0
CA D:CYS66 4.0 26.1 1.0
ND1 D:HIS83 4.0 17.9 1.0
CG D:HIS83 4.2 19.7 1.0
CB D:SER87 4.5 26.9 1.0
CA D:CYS63 4.5 26.7 1.0
CA D:CYS90 4.6 32.5 1.0
CB D:SER65 4.7 26.8 1.0
CB D:PHE92 4.7 26.4 1.0
OG D:SER87 4.7 25.2 1.0
C D:SER65 4.8 27.1 1.0
C D:CYS66 4.9 26.6 1.0
N D:HIS67 5.0 26.7 1.0

Reference:

L.Sorrentino, F.Cossu, B.Malkoc, M.Zaffaroni, M.Milani, E.Mastrangelo. Structure of Xiap-BIR1 Domain in Complex with An NF023 Analog To Be Published.
Page generated: Mon Oct 28 21:53:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy