Zinc in PDB 6gfb: Structure of the Btb/Poz Domain of Human 90K

The structure of Structure of the Btb/Poz Domain of Human 90K, PDB code: 6gfb was solved by G.Ssebyatika, T.Krey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.77 / 2.08
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	70.340, 70.340, 105.510, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 24.3

The binding sites of Zinc atom in the Structure of the Btb/Poz Domain of Human 90K (pdb code 6gfb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of the Btb/Poz Domain of Human 90K, PDB code: 6gfb:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Structure of the Btb/Poz Domain of Human 90K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Btb/Poz Domain of Human 90K within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:93.2 occ:1.00 NE2 A:HIS131 2.4 61.2 1.0 CD2 A:HIS131 3.3 61.0 1.0 CE1 A:HIS131 3.4 60.5 1.0 CG2 B:ILE249 4.4 69.3 1.0 CG A:HIS131 4.5 58.6 1.0 ND1 A:HIS131 4.5 61.0 1.0

Zinc binding site 2 out of 3 in the Structure of the Btb/Poz Domain of Human 90K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Btb/Poz Domain of Human 90K within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:48.1 occ:0.95 ND1 B:HIS131 2.2 51.4 1.0 CE1 B:HIS131 3.2 50.8 1.0 CG B:HIS131 3.2 50.5 1.0 CB B:HIS131 3.5 47.8 1.0 CA B:HIS131 4.2 48.0 1.0 NE2 B:HIS131 4.3 51.4 1.0 CD2 B:HIS131 4.4 51.7 1.0 O A:HOH406 4.4 40.6 1.0 OH A:TYR242 4.4 48.4 1.0

Zinc binding site 3 out of 3 in the Structure of the Btb/Poz Domain of Human 90K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Btb/Poz Domain of Human 90K within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:0.0 occ:1.00 CE1 B:HIS228 2.4 42.4 1.0 CB B:ALA244 3.0 50.8 1.0 NE2 B:HIS228 3.0 42.6 1.0 ND1 B:HIS228 3.2 42.3 1.0 CA B:ALA244 3.3 50.1 1.0 O B:HOH405 3.6 46.3 1.0 CD2 B:HIS228 4.0 42.9 1.0 CG B:HIS228 4.1 41.4 1.0 N B:ALA244 4.2 47.9 1.0 C B:ALA244 4.4 56.9 1.0 O B:ALA244 4.5 57.2 1.0

V.Lodermeyer, G.Ssebyatika, V.Passos, A.Ponnurangam, A.Malassa, E.Ewald, C.M.Sturzel, F.Kirchhoff, M.Rotger, C.S.Falk, A.Telenti, T.Krey, C.Goffinet. The Antiviral Activity of the Cellular Glycoprotein LGALS3BP/90K Is Species Specific. J. Virol. V. 92 2018.
ISSN: ESSN 1098-5514
PubMed: 29743357
DOI: 10.1128/JVI.00226-18