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Zinc in PDB 6gat: Solution uc(Nmr) Structure of the L22V Mutant Dna Binding Domain of Area Complexed to A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of the L22V Mutant Dna Binding Domain of Area Complexed to A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure (pdb code 6gat). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution uc(Nmr) Structure of the L22V Mutant Dna Binding Domain of Area Complexed to A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure, PDB code: 6gat:

Zinc binding site 1 out of 1 in 6gat

Go back to Zinc Binding Sites List in 6gat
Zinc binding site 1 out of 1 in the Solution uc(Nmr) Structure of the L22V Mutant Dna Binding Domain of Area Complexed to A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of the L22V Mutant Dna Binding Domain of Area Complexed to A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn67

b:0.3
occ:1.00
SG A:CYS12 2.3 0.3 1.0
SG A:CYS36 2.3 0.3 1.0
SG A:CYS15 2.3 0.3 1.0
SG A:CYS33 2.3 0.3 1.0
HB2 A:CYS36 3.0 0.3 1.0
H A:CYS33 3.1 0.3 1.0
H A:CYS36 3.2 0.3 1.0
HB3 A:CYS15 3.2 0.4 1.0
HB3 A:CYS33 3.2 0.3 1.0
CB A:CYS12 3.3 0.3 1.0
CB A:CYS36 3.3 0.3 1.0
CB A:CYS15 3.3 0.4 1.0
H A:CYS15 3.3 0.4 1.0
HB2 A:CYS12 3.4 0.3 1.0
CB A:CYS33 3.4 0.3 1.0
HB3 A:CYS12 3.4 0.4 1.0
HB2 A:ASN14 3.5 0.4 1.0
HB A:THR17 3.7 0.3 1.0
N A:CYS15 3.8 0.4 1.0
N A:CYS33 3.9 0.3 1.0
N A:CYS36 3.9 0.3 1.0
HB3 A:CYS36 4.1 0.3 1.0
H A:THR17 4.1 0.4 1.0
CA A:CYS15 4.1 0.4 1.0
HB2 A:ALA35 4.1 1.0 1.0
CA A:CYS33 4.2 0.3 1.0
HB2 A:CYS15 4.2 0.4 1.0
HB2 A:CYS33 4.2 0.3 1.0
CA A:CYS36 4.2 0.3 1.0
OG1 A:THR17 4.2 0.4 1.0
CB A:ASN14 4.4 0.4 1.0
CB A:THR17 4.5 0.4 1.0
HB3 A:ASN14 4.5 0.4 1.0
H A:ASN14 4.6 0.4 1.0
C A:ASN14 4.6 0.4 1.0
CA A:CYS12 4.7 0.4 1.0
C A:CYS15 4.7 0.4 1.0
C A:CYS33 4.7 0.3 1.0
HA A:CYS36 4.7 0.3 1.0
HD21 A:LEU32 4.8 1.1 1.0
HA A:LEU32 4.8 0.3 1.0
HB3 A:LEU32 4.8 0.3 1.0
HA A:CYS12 4.8 0.4 1.0
O A:CYS33 4.9 0.3 1.0
HG3 A:LYS52 4.9 1.5 1.0
N A:THR17 4.9 0.4 1.0
H A:GLY37 5.0 0.3 1.0
CA A:ASN14 5.0 0.4 1.0

Reference:

M.R.Starich, M.Wikstrom, S.Schumacher, H.N.Arst Jr., A.M.Gronenborn, G.M.Clore. The Solution Structure of the LEU22-->Val Mutant Area Dna Binding Domain Complexed with A Tgatag Core Element Defines A Role For Hydrophobic Packing in the Determination of Specificity. J.Mol.Biol. V. 277 621 1998.
ISSN: ISSN 0022-2836
PubMed: 9533884
DOI: 10.1006/JMBI.1997.1626
Page generated: Wed Dec 16 11:51:31 2020

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