Zinc in PDB 6g18: Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C

Enzymatic activity of Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C

All present enzymatic activity of Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C:
2.7.11.1;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C (pdb code 6g18). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C, PDB code: 6g18:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6g18

Go back to Zinc Binding Sites List in 6g18
Zinc binding site 1 out of 2 in the Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn200

b:0.5
occ:1.00
N f:CYS145 2.4 0.6 1.0
N f:LYS143 2.4 0.5 1.0
O f:CYS141 2.4 0.2 1.0
N f:CYS144 2.6 0.7 1.0
C f:LYS143 3.1 0.2 1.0
C f:GLY142 3.1 0.7 1.0
C f:CYS141 3.1 1.0 1.0
CA f:CYS145 3.1 0.8 1.0
CA f:GLY142 3.2 0.3 1.0
CA f:LYS143 3.2 0.9 1.0
C f:CYS144 3.3 0.4 1.0
N f:GLY142 3.4 0.5 1.0
CA f:CYS144 3.5 0.2 1.0
OH f:TYR140 3.9 0.6 1.0
SG f:CYS145 3.9 0.1 1.0
O f:LYS143 3.9 0.0 1.0
CB f:CYS145 4.1 0.9 1.0
O f:GLY142 4.1 0.3 1.0
CZ f:TYR140 4.1 0.4 1.0
SG f:CYS141 4.2 0.5 1.0
CA f:CYS141 4.3 0.6 1.0
CB f:CYS141 4.3 0.8 1.0
C f:CYS145 4.3 0.1 1.0
CE1 f:TYR140 4.3 0.0 1.0
N f:LEU146 4.3 0.3 1.0
O f:CYS144 4.5 0.4 1.0
CB f:LYS143 4.5 0.0 1.0
SG f:CYS144 4.5 0.5 1.0
CB f:CYS144 4.6 0.3 1.0
CE2 f:TYR140 4.8 0.0 1.0
N f:CYS141 5.0 0.9 1.0

Zinc binding site 2 out of 2 in 6g18

Go back to Zinc Binding Sites List in 6g18
Zinc binding site 2 out of 2 in the Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of A Late Human Pre-40S Ribosomal Subunit - State C within 5.0Å range:
probe atom residue distance (Å) B Occ
y:Zn500

b:20.9
occ:1.00
SG y:CYS273 2.1 41.6 1.0
SG y:CYS270 2.3 33.9 1.0
SG y:CYS285 2.5 49.2 1.0
SG y:CYS288 2.7 54.9 1.0
CB y:CYS270 3.2 32.6 1.0
CB y:CYS273 3.4 40.5 1.0
CB y:CYS285 3.5 48.6 1.0
N y:CYS288 3.5 54.5 1.0
CB y:CYS288 3.7 52.5 1.0
N y:CYS273 4.0 37.5 1.0
CA y:CYS288 4.1 51.0 1.0
CB y:HIS287 4.1 75.2 1.0
CA y:CYS273 4.2 39.6 1.0
C y:HIS287 4.6 60.9 1.0
CA y:CYS270 4.6 31.7 1.0
CA y:HIS287 4.7 65.4 1.0
C y:CYS288 4.8 47.5 1.0
CD2 y:HIS287 4.8 90.0 1.0
N y:GLY289 4.8 46.2 1.0
N y:HIS287 4.8 66.2 1.0
CG y:HIS287 4.9 87.2 1.0
CG2 y:THR292 4.9 47.2 1.0
C y:CYS273 4.9 41.7 1.0
CA y:CYS285 4.9 51.2 1.0
N y:PHE274 4.9 41.8 1.0

Reference:

M.Ameismeier, J.Cheng, O.Berninghausen, R.Beckmann. Visualizing Late States of Human 40S Ribosomal Subunit Maturation. Nature V. 558 249 2018.
ISSN: ISSN 0028-0836
PubMed: 29875412
DOI: 10.1038/S41586-018-0193-0
Page generated: Wed Dec 16 11:50:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy