Zinc in PDB 6fx6: Thioester Domain of the Staphylococcus Aureus Tie Protein

The structure of Thioester Domain of the Staphylococcus Aureus Tie Protein, PDB code: 6fx6 was solved by O.K.Miller, M.J.Banfield, U.Schwarz-Linek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.65 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.029, 73.612, 74.651, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 24.6

The binding sites of Zinc atom in the Thioester Domain of the Staphylococcus Aureus Tie Protein (pdb code 6fx6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Thioester Domain of the Staphylococcus Aureus Tie Protein, PDB code: 6fx6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Thioester Domain of the Staphylococcus Aureus Tie Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thioester Domain of the Staphylococcus Aureus Tie Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:35.5 occ:1.00 OD2 A:ASP14 2.0 34.2 1.0 O A:HOH459 2.1 23.2 1.0 CG A:ASP14 2.8 34.0 1.0 CB A:ASP14 3.0 33.0 1.0 OD1 A:ASP14 4.0 34.4 1.0 CA A:ASP14 4.5 35.3 1.0 O A:ASP14 5.0 39.5 1.0

Zinc binding site 2 out of 2 in the Thioester Domain of the Staphylococcus Aureus Tie Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Thioester Domain of the Staphylococcus Aureus Tie Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:34.0 occ:1.00 OD1 A:ASP33 2.0 33.9 1.0 O A:HOH451 2.2 16.9 1.0 CG A:ASP33 2.8 35.2 1.0 OD2 A:ASP33 3.0 38.4 1.0 CG A:ARG34 4.2 43.9 1.0 CB A:ASP33 4.3 35.9 1.0 N A:ASP33 4.6 34.4 1.0 C A:ASP33 4.7 33.2 1.0 CD A:ARG34 4.7 48.5 1.0 CA A:ASP33 4.7 34.2 1.0 NE A:ARG34 4.8 51.0 1.0 N A:ARG34 4.8 33.8 1.0

O.K.Miller, M.J.Banfield, U.Schwarz-Linek. A New Structural Class of Bacterial Thioester Domains Reveals A Slipknot Topology. Protein Sci. V. 27 1651 2018.
ISSN: ESSN 1469-896X
PubMed: 30052296
DOI: 10.1002/PRO.3478