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Zinc in PDB 6fhg: Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring

Protein crystallography data

The structure of Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring, PDB code: 6fhg was solved by K.Zeth, E.Sancho-Vaello, M.Plotka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.69 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.579, 56.094, 116.715, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 24.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring (pdb code 6fhg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring, PDB code: 6fhg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6fhg

Go back to Zinc Binding Sites List in 6fhg
Zinc binding site 1 out of 2 in the Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:80.3
occ:1.00
SG A:CYS139 2.0 36.0 1.0
ND1 A:HIS131 2.1 39.8 1.0
ND1 A:HIS30 2.2 37.2 1.0
O A:HOH367 2.3 47.2 1.0
CE1 A:HIS131 2.9 41.5 1.0
CE1 A:HIS30 3.0 38.3 1.0
CG A:HIS131 3.1 37.2 1.0
CG A:HIS30 3.2 33.9 1.0
CB A:CYS139 3.2 45.2 1.0
CB A:HIS131 3.6 32.6 1.0
CB A:HIS30 3.6 31.8 1.0
NE2 A:HIS131 4.0 41.6 1.0
O A:HOH363 4.0 47.7 1.0
CD2 A:HIS131 4.1 39.8 1.0
NE2 A:HIS30 4.2 36.9 1.0
CA A:HIS30 4.3 31.1 1.0
CD2 A:HIS30 4.3 34.6 1.0
O A:HOH352 4.6 51.7 1.0
O A:CYS80 4.6 48.2 1.0
CA A:CYS139 4.7 43.0 1.0
O A:HIS31 4.8 33.9 1.0
OH A:TYR58 4.9 41.4 1.0

Zinc binding site 2 out of 2 in 6fhg

Go back to Zinc Binding Sites List in 6fhg
Zinc binding site 2 out of 2 in the Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the TS2631 Endolysin From Thermus Scotoductus Phage with the Unique N-Terminal Moiety Responsible For Peptidoglycan Anchoring within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:83.0
occ:1.00
ND1 B:HIS131 2.1 52.7 1.0
ND1 B:HIS30 2.1 41.9 1.0
SG B:CYS139 2.2 42.0 1.0
O B:HOH341 2.6 41.1 1.0
CE1 B:HIS131 3.0 54.4 1.0
CE1 B:HIS30 3.0 41.7 1.0
CG B:HIS131 3.1 48.9 1.0
CB B:CYS139 3.2 52.4 1.0
CG B:HIS30 3.2 41.6 1.0
CB B:HIS131 3.5 43.5 1.0
CB B:HIS30 3.6 41.0 1.0
NE2 B:HIS131 4.1 53.5 1.0
CD2 B:HIS131 4.1 51.2 1.0
NE2 B:HIS30 4.2 41.4 1.0
CD2 B:HIS30 4.3 41.8 1.0
CA B:HIS30 4.3 41.9 1.0
OH B:TYR58 4.6 43.7 1.0
CA B:CYS139 4.7 56.3 1.0
CE1 B:TYR58 4.7 39.5 1.0
O B:CYS80 4.9 54.2 1.0
O B:HIS31 4.9 45.2 1.0

Reference:

M.Plotka, E.Sancho-Vaello, S.Dorawa, A.K.Kaczorowska, L.P.Kozlowski, T.Kaczorowski, K.Zeth. Structure and Function of the TS2631 Endolysin of Thermus Scotoductus Phage VB_TSC2631 with Unique N-Terminal Extension Used For Peptidoglycan Binding. Sci Rep V. 9 1261 2019.
ISSN: ESSN 2045-2322
PubMed: 30718611
DOI: 10.1038/S41598-018-37417-6
Page generated: Wed Dec 16 11:48:11 2020

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