Zinc in PDB 6eoj: Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae

The binding sites of Zinc atom in the Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae (pdb code 6eoj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae, PDB code: 6eoj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:94.7 occ:1.00 NE2 B:HIS85 2.0 89.3 1.0 SG B:CYS75 2.3 99.8 1.0 SG B:CYS67 2.3 0.7 1.0 SG B:CYS81 2.3 0.9 1.0 CE1 B:HIS85 3.0 89.3 1.0 CD2 B:HIS85 3.0 89.7 1.0 CB B:CYS67 3.3 0.9 1.0 CB B:CYS81 3.4 1.0 1.0 CB B:CYS75 3.4 97.9 1.0 O B:LYS77 3.6 0.3 1.0 ND1 B:HIS85 4.1 88.2 1.0 CG B:HIS85 4.2 88.6 1.0 CB B:TRP70 4.2 90.1 1.0 CB B:TYR83 4.6 0.3 1.0 C B:LYS77 4.7 0.7 1.0 CA B:CYS67 4.7 0.2 1.0 CA B:CYS81 4.8 0.9 1.0 N B:TRP70 4.8 96.3 1.0 CA B:CYS75 4.8 97.9 1.0 O B:TYR83 4.8 0.6 1.0

Zinc binding site 2 out of 2 in the Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Polya Polymerase Module of the Cleavage and Polyadenylation Factor (Cpf) From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:0.3 occ:1.00 NE2 B:HIS56 2.1 0.9 1.0 SG B:CYS46 2.3 0.3 1.0 SG B:CYS34 2.3 0.4 1.0 SG B:CYS52 2.3 0.2 1.0 CE1 B:HIS56 3.0 0.8 1.0 CD2 B:HIS56 3.0 0.9 1.0 CB B:CYS34 3.3 0.2 1.0 CB B:CYS52 3.4 1.0 1.0 CB B:CYS46 3.4 0.9 1.0 ND1 B:HIS56 4.1 0.4 1.0 CG B:HIS56 4.1 0.7 1.0 NH1 B:ARG48 4.5 0.1 1.0 O B:GLY49 4.5 0.5 1.0 CB B:TYR37 4.6 0.4 1.0 CB B:ARG48 4.7 0.4 1.0 CA B:CYS52 4.8 0.6 1.0 CA B:CYS46 4.8 0.1 1.0 CA B:CYS34 4.8 0.1 1.0 O B:LYS54 4.8 0.7 1.0 CD B:ARG48 4.9 0.5 1.0 O B:GLU35 4.9 0.4 1.0 CG B:TYR37 5.0 0.3 1.0

A.Casanal, A.Kumar, C.H.Hill, A.D.Easter, P.Emsley, G.Degliesposti, Y.Gordiyenko, B.Santhanam, J.Wolf, K.Wiederhold, G.L.Dornan, M.Skehel, C.V.Robinson, L.A.Passmore. Architecture of Eukaryotic Mrna 3'-End Processing Machinery. Science V. 358 1056 2017.
ISSN: ESSN 1095-9203
PubMed: 29074584
DOI: 10.1126/SCIENCE.AAO6535