Zinc in PDB 6en6: Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
Enzymatic activity of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
All present enzymatic activity of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.:
3.4.15.1;
Protein crystallography data
The structure of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor., PDB code: 6en6
was solved by
G.E.Cozier,
K.R.Acharya,
S.Fienberg,
K.Chibale,
E.D.Sturrock,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
79.70 /
1.80
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.445,
103.373,
115.646,
84.48,
85.50,
81.61
|
R / Rfree (%)
|
19.3 /
22.6
|
Other elements in 6en6:
The structure of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor. also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
(pdb code 6en6). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor., PDB code: 6en6:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 6en6
Go back to
Zinc Binding Sites List in 6en6
Zinc binding site 1 out
of 4 in the Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn710
b:16.7
occ:1.00
|
OE1
|
A:GLU389
|
1.9
|
13.5
|
1.0
|
O07
|
A:BJ2711
|
2.0
|
16.0
|
1.0
|
NE2
|
A:HIS365
|
2.2
|
16.8
|
1.0
|
NE2
|
A:HIS361
|
2.2
|
16.1
|
1.0
|
O06
|
A:BJ2711
|
2.4
|
16.3
|
1.0
|
C05
|
A:BJ2711
|
2.6
|
17.8
|
1.0
|
CD
|
A:GLU389
|
2.8
|
17.5
|
1.0
|
CD2
|
A:HIS361
|
3.1
|
17.3
|
1.0
|
CE1
|
A:HIS361
|
3.1
|
15.6
|
1.0
|
OE2
|
A:GLU389
|
3.1
|
17.7
|
1.0
|
CE1
|
A:HIS365
|
3.1
|
17.9
|
1.0
|
CD2
|
A:HIS365
|
3.1
|
15.6
|
1.0
|
HD2
|
A:HIS361
|
3.3
|
20.8
|
1.0
|
HE1
|
A:HIS361
|
3.3
|
18.7
|
1.0
|
HE1
|
A:HIS365
|
3.3
|
21.4
|
1.0
|
HD2
|
A:HIS365
|
3.3
|
18.7
|
1.0
|
HE1
|
A:TYR501
|
3.3
|
21.2
|
1.0
|
HA
|
A:GLU389
|
3.6
|
19.7
|
1.0
|
HH
|
A:TYR501
|
3.7
|
19.7
|
1.0
|
H171
|
A:BJ2711
|
3.7
|
24.5
|
1.0
|
H021
|
A:BJ2711
|
3.9
|
22.9
|
1.0
|
H241
|
A:BJ2711
|
4.0
|
21.8
|
1.0
|
C04
|
A:BJ2711
|
4.1
|
17.5
|
1.0
|
ND1
|
A:HIS361
|
4.2
|
14.5
|
1.0
|
CE1
|
A:TYR501
|
4.2
|
17.7
|
1.0
|
CG
|
A:HIS361
|
4.2
|
17.3
|
1.0
|
ND1
|
A:HIS365
|
4.2
|
17.3
|
1.0
|
CG
|
A:GLU389
|
4.3
|
17.0
|
1.0
|
CG
|
A:HIS365
|
4.3
|
17.2
|
1.0
|
H041
|
A:BJ2711
|
4.4
|
21.0
|
1.0
|
OH
|
A:TYR501
|
4.5
|
16.4
|
1.0
|
HB3
|
A:GLU389
|
4.5
|
20.3
|
1.0
|
CA
|
A:GLU389
|
4.5
|
16.4
|
1.0
|
O
|
A:HOH942
|
4.6
|
21.1
|
1.0
|
C17
|
A:BJ2711
|
4.6
|
20.4
|
1.0
|
HG3
|
A:GLU389
|
4.7
|
20.4
|
1.0
|
CB
|
A:GLU389
|
4.7
|
16.9
|
1.0
|
C02
|
A:BJ2711
|
4.7
|
19.1
|
1.0
|
CZ
|
A:TYR501
|
4.8
|
17.4
|
1.0
|
H112
|
A:BJ2711
|
4.8
|
24.1
|
1.0
|
HG2
|
A:GLU389
|
4.8
|
20.4
|
1.0
|
H172
|
A:BJ2711
|
4.9
|
24.5
|
1.0
|
OE2
|
A:GLU362
|
4.9
|
19.4
|
1.0
|
N03
|
A:BJ2711
|
4.9
|
17.5
|
1.0
|
N12
|
A:BJ2711
|
4.9
|
18.6
|
1.0
|
C13
|
A:BJ2711
|
4.9
|
20.1
|
1.0
|
HD1
|
A:HIS361
|
4.9
|
17.4
|
1.0
|
C24
|
A:BJ2711
|
4.9
|
18.2
|
1.0
|
O14
|
A:BJ2711
|
5.0
|
19.9
|
1.0
|
|
Zinc binding site 2 out
of 4 in 6en6
Go back to
Zinc Binding Sites List in 6en6
Zinc binding site 2 out
of 4 in the Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn709
b:17.4
occ:1.00
|
OE1
|
B:GLU389
|
1.9
|
19.7
|
1.0
|
O07
|
B:BJ2710
|
2.0
|
16.9
|
1.0
|
NE2
|
B:HIS365
|
2.1
|
18.2
|
1.0
|
NE2
|
B:HIS361
|
2.2
|
17.6
|
1.0
|
O06
|
B:BJ2710
|
2.6
|
16.9
|
1.0
|
C05
|
B:BJ2710
|
2.6
|
17.4
|
1.0
|
CD
|
B:GLU389
|
2.9
|
17.2
|
1.0
|
CE1
|
B:HIS365
|
2.9
|
19.2
|
1.0
|
HE1
|
B:HIS365
|
3.0
|
23.0
|
1.0
|
CE1
|
B:HIS361
|
3.1
|
16.6
|
1.0
|
CD2
|
B:HIS361
|
3.1
|
17.4
|
1.0
|
OE2
|
B:GLU389
|
3.2
|
18.2
|
1.0
|
CD2
|
B:HIS365
|
3.2
|
19.2
|
1.0
|
HE1
|
B:TYR501
|
3.2
|
19.3
|
1.0
|
HD2
|
B:HIS361
|
3.3
|
20.9
|
1.0
|
HE1
|
B:HIS361
|
3.3
|
19.9
|
1.0
|
HD2
|
B:HIS365
|
3.4
|
23.1
|
1.0
|
HA
|
B:GLU389
|
3.6
|
22.2
|
1.0
|
HH
|
B:TYR501
|
3.6
|
19.4
|
1.0
|
H171
|
B:BJ2710
|
3.8
|
24.2
|
1.0
|
H021
|
B:BJ2710
|
3.8
|
21.3
|
1.0
|
C04
|
B:BJ2710
|
4.1
|
17.1
|
1.0
|
ND1
|
B:HIS365
|
4.1
|
19.4
|
1.0
|
H241
|
B:BJ2710
|
4.1
|
22.9
|
1.0
|
CE1
|
B:TYR501
|
4.1
|
16.1
|
1.0
|
ND1
|
B:HIS361
|
4.2
|
17.6
|
1.0
|
CG
|
B:HIS361
|
4.2
|
16.6
|
1.0
|
CG
|
B:GLU389
|
4.2
|
18.9
|
1.0
|
CG
|
B:HIS365
|
4.2
|
19.3
|
1.0
|
H041
|
B:BJ2710
|
4.4
|
20.5
|
1.0
|
OH
|
B:TYR501
|
4.4
|
16.1
|
1.0
|
CA
|
B:GLU389
|
4.5
|
18.5
|
1.0
|
HB3
|
B:GLU389
|
4.5
|
21.8
|
1.0
|
O
|
B:HOH986
|
4.6
|
23.7
|
1.0
|
HG3
|
B:GLU389
|
4.6
|
22.6
|
1.0
|
CB
|
B:GLU389
|
4.7
|
18.1
|
1.0
|
C02
|
B:BJ2710
|
4.7
|
17.7
|
1.0
|
C17
|
B:BJ2710
|
4.7
|
20.2
|
1.0
|
CZ
|
B:TYR501
|
4.8
|
16.6
|
1.0
|
H112
|
B:BJ2710
|
4.8
|
24.1
|
1.0
|
N03
|
B:BJ2710
|
4.8
|
18.1
|
1.0
|
N12
|
B:BJ2710
|
4.8
|
18.4
|
1.0
|
HD1
|
B:HIS365
|
4.8
|
23.3
|
1.0
|
HG2
|
B:GLU389
|
4.9
|
22.6
|
1.0
|
C13
|
B:BJ2710
|
4.9
|
18.7
|
1.0
|
OE2
|
B:GLU362
|
4.9
|
19.6
|
1.0
|
O14
|
B:BJ2710
|
4.9
|
18.5
|
1.0
|
HD1
|
B:HIS361
|
5.0
|
21.1
|
1.0
|
C24
|
B:BJ2710
|
5.0
|
19.0
|
1.0
|
|
Zinc binding site 3 out
of 4 in 6en6
Go back to
Zinc Binding Sites List in 6en6
Zinc binding site 3 out
of 4 in the Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn708
b:18.6
occ:1.00
|
OE1
|
C:GLU389
|
2.0
|
17.7
|
1.0
|
NE2
|
C:HIS365
|
2.1
|
19.4
|
1.0
|
NE2
|
C:HIS361
|
2.1
|
17.8
|
1.0
|
O07
|
C:BJ2709
|
2.1
|
20.7
|
1.0
|
O06
|
C:BJ2709
|
2.3
|
17.2
|
1.0
|
C05
|
C:BJ2709
|
2.6
|
20.3
|
1.0
|
CD
|
C:GLU389
|
2.9
|
19.4
|
1.0
|
CE1
|
C:HIS365
|
3.0
|
20.4
|
1.0
|
CD2
|
C:HIS361
|
3.1
|
19.3
|
1.0
|
CE1
|
C:HIS361
|
3.1
|
21.8
|
1.0
|
HE1
|
C:HIS365
|
3.1
|
24.4
|
1.0
|
CD2
|
C:HIS365
|
3.1
|
19.4
|
1.0
|
OE2
|
C:GLU389
|
3.2
|
19.1
|
1.0
|
HE1
|
C:TYR501
|
3.2
|
21.6
|
1.0
|
HD2
|
C:HIS361
|
3.2
|
23.2
|
1.0
|
HE1
|
C:HIS361
|
3.3
|
26.2
|
1.0
|
HD2
|
C:HIS365
|
3.4
|
23.3
|
1.0
|
HH
|
C:TYR501
|
3.6
|
22.2
|
1.0
|
HA
|
C:GLU389
|
3.7
|
25.2
|
1.0
|
H171
|
C:BJ2709
|
3.7
|
26.2
|
1.0
|
H021
|
C:BJ2709
|
3.9
|
25.9
|
1.0
|
H241
|
C:BJ2709
|
4.0
|
27.5
|
1.0
|
CE1
|
C:TYR501
|
4.1
|
18.0
|
1.0
|
ND1
|
C:HIS365
|
4.1
|
19.6
|
1.0
|
C04
|
C:BJ2709
|
4.1
|
21.1
|
1.0
|
ND1
|
C:HIS361
|
4.2
|
19.4
|
1.0
|
CG
|
C:HIS361
|
4.2
|
19.5
|
1.0
|
CG
|
C:HIS365
|
4.2
|
20.3
|
1.0
|
CG
|
C:GLU389
|
4.3
|
19.4
|
1.0
|
OH
|
C:TYR501
|
4.4
|
18.5
|
1.0
|
H041
|
C:BJ2709
|
4.4
|
25.3
|
1.0
|
HB3
|
C:GLU389
|
4.5
|
25.5
|
1.0
|
CA
|
C:GLU389
|
4.5
|
21.0
|
1.0
|
O
|
C:HOH952
|
4.6
|
24.8
|
1.0
|
C17
|
C:BJ2709
|
4.7
|
21.9
|
1.0
|
CB
|
C:GLU389
|
4.7
|
21.2
|
1.0
|
HG3
|
C:GLU389
|
4.7
|
23.3
|
1.0
|
CZ
|
C:TYR501
|
4.7
|
19.0
|
1.0
|
C02
|
C:BJ2709
|
4.7
|
21.6
|
1.0
|
O14
|
C:BJ2709
|
4.8
|
23.0
|
1.0
|
C13
|
C:BJ2709
|
4.8
|
22.4
|
1.0
|
OE2
|
C:GLU362
|
4.9
|
21.3
|
1.0
|
HD1
|
C:HIS365
|
4.9
|
23.5
|
1.0
|
H252
|
C:BJ2709
|
4.9
|
27.1
|
1.0
|
C24
|
C:BJ2709
|
4.9
|
22.9
|
1.0
|
HG2
|
C:GLU389
|
4.9
|
23.3
|
1.0
|
N03
|
C:BJ2709
|
4.9
|
21.6
|
1.0
|
HD1
|
C:HIS361
|
4.9
|
23.2
|
1.0
|
H172
|
C:BJ2709
|
4.9
|
26.2
|
1.0
|
N12
|
C:BJ2709
|
5.0
|
20.8
|
1.0
|
|
Zinc binding site 4 out
of 4 in 6en6
Go back to
Zinc Binding Sites List in 6en6
Zinc binding site 4 out
of 4 in the Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure B of the Angiotensin-1 Converting Enzyme N-Domain in Complex with A Diprolyl Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn709
b:17.7
occ:1.00
|
OE2
|
D:GLU389
|
1.9
|
20.5
|
1.0
|
NE2
|
D:HIS365
|
2.1
|
17.2
|
1.0
|
O07
|
D:BJ2710
|
2.1
|
20.2
|
1.0
|
NE2
|
D:HIS361
|
2.1
|
16.9
|
1.0
|
O06
|
D:BJ2710
|
2.5
|
15.9
|
1.0
|
C05
|
D:BJ2710
|
2.6
|
17.6
|
1.0
|
CD
|
D:GLU389
|
2.9
|
17.3
|
1.0
|
CE1
|
D:HIS365
|
2.9
|
17.4
|
1.0
|
HE1
|
D:HIS365
|
3.0
|
20.9
|
1.0
|
CD2
|
D:HIS361
|
3.1
|
17.5
|
1.0
|
CE1
|
D:HIS361
|
3.1
|
17.4
|
1.0
|
OE1
|
D:GLU389
|
3.1
|
17.7
|
1.0
|
CD2
|
D:HIS365
|
3.2
|
17.1
|
1.0
|
HD2
|
D:HIS361
|
3.3
|
21.1
|
1.0
|
HE1
|
D:TYR501
|
3.3
|
21.3
|
1.0
|
HE1
|
D:HIS361
|
3.3
|
20.9
|
1.0
|
HD2
|
D:HIS365
|
3.4
|
20.5
|
1.0
|
HA
|
D:GLU389
|
3.7
|
21.7
|
1.0
|
HH
|
D:TYR501
|
3.7
|
21.0
|
1.0
|
H171
|
D:BJ2710
|
3.7
|
21.4
|
1.0
|
H021
|
D:BJ2710
|
3.9
|
22.7
|
1.0
|
H241
|
D:BJ2710
|
4.0
|
25.0
|
1.0
|
ND1
|
D:HIS365
|
4.1
|
17.9
|
1.0
|
C04
|
D:BJ2710
|
4.2
|
18.4
|
1.0
|
CE1
|
D:TYR501
|
4.2
|
17.8
|
1.0
|
ND1
|
D:HIS361
|
4.2
|
16.5
|
1.0
|
CG
|
D:HIS361
|
4.2
|
17.6
|
1.0
|
CG
|
D:HIS365
|
4.2
|
17.5
|
1.0
|
CG
|
D:GLU389
|
4.3
|
17.9
|
1.0
|
OH
|
D:TYR501
|
4.5
|
17.5
|
1.0
|
H041
|
D:BJ2710
|
4.5
|
22.0
|
1.0
|
CA
|
D:GLU389
|
4.5
|
18.1
|
1.0
|
O
|
D:HOH1041
|
4.6
|
18.6
|
1.0
|
HB3
|
D:GLU389
|
4.6
|
20.6
|
1.0
|
C17
|
D:BJ2710
|
4.6
|
17.8
|
1.0
|
HG3
|
D:GLU389
|
4.7
|
21.4
|
1.0
|
C02
|
D:BJ2710
|
4.7
|
18.9
|
1.0
|
CB
|
D:GLU389
|
4.7
|
17.2
|
1.0
|
CZ
|
D:TYR501
|
4.8
|
17.8
|
1.0
|
H112
|
D:BJ2710
|
4.8
|
24.3
|
1.0
|
OE2
|
D:GLU362
|
4.8
|
19.6
|
1.0
|
H172
|
D:BJ2710
|
4.8
|
21.4
|
1.0
|
HD1
|
D:HIS365
|
4.9
|
21.5
|
1.0
|
HG2
|
D:GLU389
|
4.9
|
21.4
|
1.0
|
N12
|
D:BJ2710
|
4.9
|
18.7
|
1.0
|
N03
|
D:BJ2710
|
4.9
|
18.6
|
1.0
|
C24
|
D:BJ2710
|
4.9
|
20.9
|
1.0
|
C13
|
D:BJ2710
|
4.9
|
18.6
|
1.0
|
H252
|
D:BJ2710
|
4.9
|
23.6
|
1.0
|
HD1
|
D:HIS361
|
5.0
|
19.8
|
1.0
|
O14
|
D:BJ2710
|
5.0
|
17.9
|
1.0
|
|
Reference:
S.Fienberg,
G.E.Cozier,
K.R.Acharya,
K.Chibale,
E.D.Sturrock.
The Design and Development of A Potent and Selective Novel Diprolyl Derivative That Binds to the N-Domain of Angiotensin-I Converting Enzyme. J. Med. Chem. V. 61 344 2018.
ISSN: ISSN 1520-4804
PubMed: 29206036
DOI: 10.1021/ACS.JMEDCHEM.7B01478
Page generated: Mon Oct 28 20:13:15 2024
|