Zinc in PDB 6eiy: Crystal Structure of KDM5B in Complex with KDOPZ000034A.

The structure of Crystal Structure of KDM5B in Complex with KDOPZ000034A., PDB code: 6eiy was solved by V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.98 / 2.15
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	142.380, 142.380, 152.170, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 21.5

The structure of Crystal Structure of KDM5B in Complex with KDOPZ000034A. also contains other interesting chemical elements:

Manganese	(Mn)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Zinc atom in the Crystal Structure of KDM5B in Complex with KDOPZ000034A. (pdb code 6eiy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of KDM5B in Complex with KDOPZ000034A., PDB code: 6eiy:

Zinc binding site 1 out of 1 in the Crystal Structure of KDM5B in Complex with KDOPZ000034A.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of KDM5B in Complex with KDOPZ000034A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:42.6 occ:1.00 ND1 A:HIS718 2.1 46.5 1.0 SG A:CYS715 2.3 41.6 1.0 SG A:CYS692 2.3 41.6 1.0 SG A:CYS695 2.4 43.5 1.0 CE1 A:HIS718 3.0 49.2 1.0 CB A:CYS692 3.1 37.0 1.0 CG A:HIS718 3.2 49.5 1.0 CB A:CYS695 3.3 40.5 1.0 CB A:CYS715 3.5 34.0 1.0 CB A:HIS718 3.6 41.9 1.0 N A:CYS695 3.8 48.1 1.0 N A:CYS715 3.8 41.3 1.0 NE2 A:HIS718 4.1 52.6 1.0 CA A:CYS695 4.1 45.1 1.0 CA A:CYS715 4.2 37.7 1.0 CD2 A:HIS718 4.2 53.3 1.0 CG2 A:THR697 4.3 38.9 1.0 N A:HIS718 4.6 45.6 1.0 CD A:ARG619 4.6 59.8 1.0 CA A:CYS692 4.6 39.5 1.0 CB A:LYS694 4.6 45.9 1.0 C A:CYS715 4.7 39.9 1.0 O A:CYS715 4.7 38.6 1.0 CA A:HIS718 4.8 45.5 1.0 C A:CYS695 4.8 48.6 1.0 C A:LYS694 4.9 49.7 1.0 CB A:HIS717 4.9 45.7 1.0 CG A:ARG619 4.9 63.7 1.0 C A:VAL714 5.0 39.0 1.0

V.Srikannathasan, V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft. N/A N/A.